ArticleMolecular biology reports2015
Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.).
Article in Molecular biology reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
21 citing papers in PubMed, 52 citations in OpenAlex.
- Genome wide identification of Dof transcription factors in Carmine radish reveals RsDof33 role in cadmium stress and anthocyanin biosynthesis.Scientific reports · 2025Article
- Genome-wide identification of DNA-binding with one finger transcription factor genes in Chinese chestnut and their response to abiotic stress.Frontiers in plant science · 2025Article
- Genome-Wide Identification of theInternational journal of molecular sciences · 2024Article
- Genome-Based Identification of the Dof Gene Family in ThreeInternational journal of molecular sciences · 2024Article
- Genome-wide analysis of plant specific YABBY transcription factor gene family in carrot (Dacus carota) and its comparison with Arabidopsis.BMC genomic data · 2024Article
- Genome-wide in-silico analysis of ethylene biosynthesis gene family in Musa acuminata L. and their response under nutrient stress.Scientific reports · 2024Article
- Characterization of Dof Transcription Factors and the Heat-Tolerant Function ofInternational journal of molecular sciences · 2023Article
- Genome-Wide Identification and Expression Analysis of thePlants (Basel, Switzerland) · 2023Article
- Genome-Wide Identification and Analysis ofGenes · 2022Article
- Genome-Wide Identification of theInternational journal of molecular sciences · 2022Article
- Selection and functional identification ofOpen life sciences · 2022Article
- Alteration of proteome in germinating seedlings of piegonpea (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Genomic characterization of ZIP genes in pigeonpea (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Genome-wide analysis of wheat DNA-binding with one finger (Dof) transcription factor genes: evolutionary characteristics and diverse abiotic stress responses.BMC genomics · 2020Article
- Article
- Genome-wide identification and characterization of Dof transcription factors in eggplant (PeerJ · 2018Article
- PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes.PloS one · 2017Article
- Identification and characterisation of Dof transcription factors in the cucumber genome.Scientific reports · 2016Article
- Transcriptome-Based Analysis of Dof Family Transcription Factors and Their Responses to Abiotic Stress in Tea Plant (International journal of genomics · 2016Article
- Genome-Wide Identification and Expression Profile of Dof Transcription Factor Gene Family in Pepper (Capsicum annuum L.).Frontiers in plant science · 2016Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The DNA binding with One Finger (Dof) protein is a plant specific transcription factor involved in the regulation of wide range of processes. The analysis of whole genome sequence of pigeonpea has identified 38 putative Dof genes (CcDof) distributed on 8 chromosomes. A total of 17 out of 38 CcDof genes were found to be intronless. A comprehensive in silico characterization of CcDof gene family including the gene structure, chromosome location, protein motif, phylogeny, gene duplication and functional divergence has been attempted. The phylogenetic analysis resulted in 3 major clusters with closely related members in phylogenetic tree revealed common motif distribution. The in silico cis-regulatory element analysis revealed functional diversity with predominance of light responsive and stress responsive elements indicating the possibility of these CcDof genes to be associated with photoperiodic control and biotic and abiotic stress. The duplication pattern showed that tandem duplication is predominant over segmental duplication events. The comparative phylogenetic analysis of these Dof proteins along with 78 soybean, 36 Arabidopsis and 30 rice Dof proteins revealed 7 major clusters. Several groups of orthologs and paralogs were identified based on phylogenetic tree constructed. Our study provides useful information for functional characterization of CcDof genes.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.