Evidence map›Paper›PMID 25344504›Full record

ArticlePlant physiology2014

An optical clearing technique for plant tissues allowing deep imaging and compatible with fluorescence microscopy.

Cherish A Warner, Meredith L Biedrzycki, Samuel S Jacobs, Randall J Wisser, Jeffrey L Caplan, D Janine Sherrier

Abstract read
In one paragraph

Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Means to Quantify Vascular Cell File Numbers in Different Tissues.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. TISSUE CLEARING.Nature reviews. Methods primers · 2021
    Article
  16. TheFrontiers in plant science · 2021
    Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Cherish A WarnerDelaware Biotechnology Institute (C.A.W., S.S.J., J.C., D.J.S.) andDepartments of Biological Sciences (C.A.W., M.L.B., S.S.J., J.C., D.J.S.); andPlant and Soil Sciences (M.L.B., R.J.W., J.C., D.J.S.), University of Delaware, Newark, Delaware 19717-1303 jcaplan@udel.edu sherrier@dbi.udel.edu.
Meredith L BiedrzyckiDelaware Biotechnology Institute (C.A.W., S.S.J., J.C., D.J.S.) andDepartments of Biological Sciences (C.A.W., M.L.B., S.S.J., J.C., D.J.S.); andPlant and Soil Sciences (M.L.B., R.J.W., J.C., D.J.S.), University of Delaware, Newark, Delaware 19717-1303.
Samuel S JacobsDelaware Biotechnology Institute (C.A.W., S.S.J., J.C., D.J.S.) andDepartments of Biological Sciences (C.A.W., M.L.B., S.S.J., J.C., D.J.S.); andPlant and Soil Sciences (M.L.B., R.J.W., J.C., D.J.S.), University of Delaware, Newark, Delaware 19717-1303.
Randall J WisserDelaware Biotechnology Institute (C.A.W., S.S.J., J.C., D.J.S.) andDepartments of Biological Sciences (C.A.W., M.L.B., S.S.J., J.C., D.J.S.); andPlant and Soil Sciences (M.L.B., R.J.W., J.C., D.J.S.), University of Delaware, Newark, Delaware 19717-1303.
Jeffrey L CaplanDelaware Biotechnology Institute (C.A.W., S.S.J., J.C., D.J.S.) andDepartments of Biological Sciences (C.A.W., M.L.B., S.S.J., J.C., D.J.S.); andPlant and Soil Sciences (M.L.B., R.J.W., J.C., D.J.S.), University of Delaware, Newark, Delaware 19717-1303 jcaplan@udel.edu sherrier@dbi.udel.edu.
D Janine SherrierDelaware Biotechnology Institute (C.A.W., S.S.J., J.C., D.J.S.) andDepartments of Biological Sciences (C.A.W., M.L.B., S.S.J., J.C., D.J.S.); andPlant and Soil Sciences (M.L.B., R.J.W., J.C., D.J.S.), University of Delaware, Newark, Delaware 19717-1303 jcaplan@udel.edu sherrier@dbi.udel.edu.

Funding

Predictive Modeling & Optimal Control Framework for Model-Based Epidemic Response in DelawareP20GM103446 · NIGMS · UNIVERSITY OF DELAWARE · PI Anjana Narayan Bhat · 2012 to 2026
$67.2M
Study of chloroplast stromules during PCD and inter-organellar communicationR01GM097587 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CAPLAN, JEFFREY L, DINESH-KUMAR, SAVITHRAMMA P · 2011 to 2017
$1.6M
NIGMS NIH HHS 5R01GM097587NIGMS NIH HHS P20 GM103446NIGMS NIH HHS R01 GM097587PHS HHS IOS-0923668PHS HHS IOS-1127076PHS HHS IOS-1127155
6 · The paper itself

Abstract

We report on a nondestructive clearing technique that enhances transmission of light through specimens from diverse plant species, opening unique opportunities for microscope-enabled plant research. After clearing, plant organs and thick tissue sections are amenable to deep imaging. The clearing method is compatible with immunocytochemistry techniques and can be used in concert with common fluorescent probes, including widely adopted protein tags such as GFP, which has fluorescence that is preserved during the clearing process.

Indexed as

Fluorescent DyesImaging, Three-DimensionalMedicago truncatulaMicroscopy, FluorescenceNicotianaPisum sativumPlant LeavesPreservation, BiologicalRoot Nodules, PlantZea maysFluorescent Dyes

Identifiers

PMID25344504
PMCPMC4256880

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.