Evidence map›Paper›PMID 25344240›Full record

ArticleApplied and environmental microbiology2015

Rotavirus genotypes in sewage treatment plants and in children hospitalized with acute diarrhea in Italy in 2010 and 2011.

Franco M Ruggeri, Paolo Bonomo, Giovanni Ianiro, Andrea Battistone, Roberto Delogu, Cinzia Germinario, Maria Chironna, Maria Triassi, Rosalba Campagnuolo, Antonella Cicala and 5 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
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  9. Detection and evaluation of rotavirus surveillance methods as viral indicator in the aquatic environments.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Review
  10. Article
  11. Article
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  15. Molecular detection and genotyping of group A rotavirus in two wastewater treatment plants, Iran.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  16. Article
  17. Article
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  20. Monitoring human enteric viruses in wastewater and relevance to infections encountered in the clinical setting: a one-year experiment in central France, 2014 to 2015.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Franco M RuggeriDepartment of Veterinary Public Health and Food Safety, Istituto Superiore di Sanità, Rome, Italy.
Paolo BonomoNational Center for Immunobiologicals Research and Evaluation, Istituto Superiore di Sanità, Rome, Italy.
Giovanni IaniroDepartment of Veterinary Public Health and Food Safety, Istituto Superiore di Sanità, Rome, Italy.
Andrea BattistoneNational Center for Immunobiologicals Research and Evaluation, Istituto Superiore di Sanità, Rome, Italy.
Roberto DeloguNational Center for Immunobiologicals Research and Evaluation, Istituto Superiore di Sanità, Rome, Italy.
Cinzia GerminarioOsservatorio Epidemiologico Regione Puglia, Bari, Italy University of Bari, Bari, Italy.
Maria ChironnaOsservatorio Epidemiologico Regione Puglia, Bari, Italy University of Bari, Bari, Italy.
Maria TriassiDepartment of Public Health, University of Naples, Naples, Italy.
Rosalba CampagnuoloOspedale Santobono-Pausilipon, Naples, Italy.
Antonella CicalaAMAP SpA Impianto Depurazione Acqua dei Corsari, Palermo, Italy.
Giovanni M GiammancoDepartment of Sciences for Health Promotion and Mother and Child Care, University of Palermo, Palermo, Italy.
Paolo CastigliaUniversity of Sassari, Sassari, Italy.
Caterina SerraUniversity of Sassari, Sassari, Italy.
Andrea GaggioliNational Center for Immunobiologicals Research and Evaluation, Istituto Superiore di Sanità, Rome, Italy.
Lucia FioreNational Center for Immunobiologicals Research and Evaluation, Istituto Superiore di Sanità, Rome, Italy lucia.fiore@iss.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although the molecular surveillance network RotaNet-Italy provides useful nationwide data on rotaviruses causing severe acute gastroenteritis in children in Italy, scarce information is available on rotavirus circulation in the general Italian population, including adults with mild or asymptomatic infection. We investigated the genotypes of rotaviruses present in urban wastewaters and compared them with those of viral strains from clinical pediatric cases. During 2010 and 2011, 285 sewage samples from 4 Italian cities were tested by reverse transcription-PCRs (RT-PCRs) specific for rotavirus VP7 and VP4 genes. Rotavirus was detected in 172 (60.4%) samples, 26 of which contained multiple rotavirus G (VP7 gene) genotypes, for a total of 198 G types. Thirty-two samples also contained multiple P (VP4 gene) genotypes, yielding 204 P types in 172 samples. Genotype G1 accounted for 65.6% of rotaviruses typed, followed by genotypes G2 (20.2%), G9 (7.6%), G4 (4.6%), G6 (1.0%), G3 (0.5%), and G26 (0.5%). VP4 genotype P[8] accounted for 75.0% of strains, genotype P[4] accounted for 23.0% of strains, and the uncommon genotypes P[6], P[9], P[14], and P[19] accounted for 2.0% of strains altogether. These rotavirus genotypes were also found in pediatric patients hospitalized in the same areas and years but in different proportions. Specifically, genotypes G2, G9, and P[4] were more prevalent in sewage samples than among samples from patients, which suggests either a larger circulation of the latter strains through the general population not requiring medical care or their greater survival in wastewaters. A high level of nucleotide identity in the G1, G2, and G6 VP7 sequences was observed between strains from the environment and those from patients.

Indexed as

Antigens, ViralCapsid ProteinsChildCitiesDiarrheaFecesGenotypeHumansItalyMolecular Sequence DataReverse Transcriptase Polymerase Chain ReactionRNA, ViralRotavirusRotavirus InfectionsSequence Analysis, DNASewageAntigens, ViralCapsid ProteinsRNA, ViralSewageVP4 protein, RotavirusVP7 protein, Rotavirus

Identifiers

PMID25344240
PMCPMC4272723

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.