Evidence map›Paper›PMID 25343990›Full record

SynthesisHuman molecular genetics2015

Genome-wide association study of selenium concentrations.

Marilyn C Cornelis, Myriam Fornage, Millennia Foy, Pengcheng Xun, Vadim N Gladyshev, Steve Morris, Daniel I Chasman, Frank B Hu, Eric B Rimm, Peter Kraft and 3 more

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 4 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 4 syntheses or guidelines pooled it, 96 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 1 country.

Marilyn C CornelisChanning Division of Network Medicine, Department of Nutrition, mcorneli@hsph.harvard.edu.
Myriam FornageCenter for Human Genetics, University of Texas Health Science Center at Houston, Houston, TX, USA.
Millennia FoyCenter for Human Genetics, University of Texas Health Science Center at Houston, Houston, TX, USA.
Pengcheng XunDepartment of Epidemiology and Biostatistics, Indiana University at Bloomington, Bloomington, IN, USA.
Vadim N GladyshevDivision of Genetics and.
Steve MorrisUniversity of Missouri Research Reactor Center, Columbia, MO, USA.
Daniel I ChasmanDivision of Preventive Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Frank B HuChanning Division of Network Medicine, Department of Nutrition, Department of Epidemiology, and.
Eric B RimmChanning Division of Network Medicine, Department of Nutrition, Department of Epidemiology, and.
Peter KraftProgram in Genetic Epidemiology and Statistical Genetics, Harvard School of Public Health, Boston, MA, USA.
Joanne M JordanThurston Arthritis Research Center, University of North Carolina at Chapel Hill, NC, USA, Department of Medicine and Department of Orthopaedics, UNC School of Medicine, NC, USA, Department of Epidemiology, UNC Gillings School of Global Public Health, NC, USA.
Dariush MozaffarianChanning Division of Network Medicine, Department of Nutrition, Department of Epidemiology, and Friedman School of Nutrition Science and Policy, Tufts University, Boston, MA, USA.
Ka HeDepartment of Epidemiology and Biostatistics, Indiana University at Bloomington, Bloomington, IN, USA.
Indiana University Bloomington · USThe University of Texas Health Science Center at Houston · USBrigham and Women's Hospital · USHarvard University · USTufts University · USUniversity of Missouri · USUniversity of North Carolina Health Care · US

Funding

Statistical MethodsP01CA087969 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI TWOROGER, SHELLEY S · 2000 to 2019
$77.8M
Dietary Etiology of Heart DiseaseR01HL035464 · NHLBI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI ERIC B RIMM, Qi Sun · 1986 to 2026
$13.6M
Characterizing Genetic Susceptibility to Breast and Prostate Cancer; the BPC3U01CA098233 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI HUNTER, DAVID JOHN · 2003 to 2010
$10.8M
BIOCHEMICAL AND GENETIC MARKERS OF TYPE 2 DIABETES RISKR01DK058845 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI HU, FRANK B · 2001 to 2013
$7.8M
Inflammation and Colorectal NeoplasiaR01CA137178 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI CHAN, ANDREW T · 2009 to 2019
$6.5M
Project 3P60AR049465 · NIAMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JORDAN, JOANNE M. · 2003 to 2008
$6.0M
Selenoproteins as Targets for Cancer PreventionR01CA080946 · NCI · UNIVERSITY OF NEBRASKA LINCOLN · PI GLADYSHEV, VADIM N. · 2001 to 2018
$4.5M
Mercury, Selenium, and Risk of Cardiovascular Disease in Women and MenR01ES014433 · NIEHS · HARVARD SCHOOL OF PUBLIC HEALTH · PI MOZAFFARIAN, DARIUSH · 2007 to 2011
$4.0M
IDENTITY OF TERMINATOR AND SELENOCYSTEINE UGA CODONSR01GM061603 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI GLADYSHEV, VADIM N. · 2000 to 2016
$4.0M
Genes of the CYP450-Derived Eicosanoids Pathway in Subclinical AtherosclerosisR01HL084099 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI FORNAGE, MYRIAM · 2007 to 2010
$2.8M
Women's knee motion patterns in functional activitiesP60AR030701 · NIAMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI CALLAHAN, LEIGH FLEMING · 1986 to 2001
$1.9M
Trace Elements and CVD Risks Factors Among Young AdultsR01HL081572 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAHE, KA · 2006 to 2008
$1.2M
Intramural NIH HHSNCI NIH HHS P01 CA087969NCI NIH HHS P01CA087969NCI NIH HHS R01 CA040356NCI NIH HHS R01 CA080946NCI NIH HHS R01 CA137178NCI NIH HHS R01CA137178NCI NIH HHS R01CA40356NCI NIH HHS U01 CA098233NCI NIH HHS U01CA98233NHGRI NIH HHS U01 HG004399NHGRI NIH HHS U01HG004399NHGRI NIH HHS U01-HG-004729NHLBI NIH HHS HHSN268200900041CNHLBI NIH HHS HHSN268201300025CNHLBI NIH HHS HHSN268201300026CNHLBI NIH HHS HHSN268201300027CNHLBI NIH HHS HHSN268201300028CNHLBI NIH HHS HHSN268201300029CNHLBI NIH HHS R01 HL035464NHLBI NIH HHS R01 HL081572NHLBI NIH HHS R01HL081572NHLBI NIH HHS R01 HL084099NHLBI NIH HHS R01-HL-084099NHLBI NIH HHS R01HL35464NIAMS NIH HHS P60 AR030701NIAMS NIH HHS P60 AR049465NIAMS NIH HHS P60-AR30701NIAMS NIH HHS P-60-AR49465NIA NIH HHS AG0005NIDDK NIH HHS R01 DK058845NIDDK NIH HHS R01DK058845NIEHS NIH HHS R01 ES014433NIGMS NIH HHS R01 GM061603PHS HHS S043PHS HHS S1733PHS HHS S3486
6 · The paper itself

Abstract

Selenium (Se) is an essential trace element in human nutrition, but its role in certain health conditions, particularly among Se sufficient populations, is controversial. A genome-wide association study (GWAS) of blood Se concentrations previously identified a locus at 5q14 near BHMT. We performed a GW meta-analysis of toenail Se concentrations, which reflect a longer duration of exposure than blood Se concentrations, including 4162 European descendants from four US cohorts. Toenail Se was measured using neutron activation analysis. We identified a GW-significant locus at 5q14 (P < 1 × 10(-16)), the same locus identified in the published GWAS of blood Se based on independent cohorts. The lead single-nucleotide polymorphism (SNP) explained ∼1% of the variance in toenail Se concentrations. Using GW-summary statistics from both toenail and blood Se, we observed statistical evidence of polygenic overlap (P < 0.001) and meta-analysis of results from studies of either trait (n = 9639) yielded a second GW-significant locus at 21q22.3, harboring CBS (P < 4 × 10(-8)). Proteins encoded by genes at 5q14 and 21q22.3 function in homocysteine (Hcy) metabolism, and index SNPs for each have previously been associated with betaine and Hcy levels in GWAS. Our findings show evidence of a genetic link between Se and Hcy pathways, both involved in cardiometabolic disease.

Indexed as

Genome-Wide Association StudyCoronary Artery DiseaseGenetic LociGenetic Predisposition to DiseaseGenotypeGenotyping TechniquesHomocysteineHumansNailsPolymorphism, Single NucleotideSeleniumSelenoproteinsThioredoxin Reductase 1HomocysteineSeleniumSelenoproteinsThioredoxin Reductase 1TXNRD1 protein, human

Identifiers

PMID25343990
PMCPMC4321444
OpenAlexW2102583984

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.