Evidence map›Paper›PMID 25343789›Full record

ArticleJournal of synchrotron radiation2014

Solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt.

Alexei S Soares, Jeffrey D Mullen, Ruchi M Parekh, Grace S McCarthy, Christian G Roessler, Rick Jackimowicz, John M Skinner, Allen M Orville, Marc Allaire, Robert M Sweet

Abstract read
In one paragraph

Article in Journal of synchrotron radiation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Alexei S SoaresPhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA.
Jeffrey D MullenOffice of Educational Programs, Brookhaven National Laboratory, Upton, NY 11973, USA.
Ruchi M ParekhOffice of Educational Programs, Brookhaven National Laboratory, Upton, NY 11973, USA.
Grace S McCarthyPhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA.
Christian G RoesslerPhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA.
Rick JackimowiczPhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA.
John M SkinnerPhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA.
Allen M OrvillePhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA.
Marc AllairePhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA.
Robert M SweetPhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973, USA.

Funding

X-RAY STRUCTURE OF RIFM PROTEIN FROM THE BIOSYNTHESIS PATHWAY OF THE ANSAMYCIN AP41RR012408 · NCRR · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MARIUZZA, ROY A · 1998 to 2011
$32.2M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
NCI NIH HHS Y1-CO-1020NCRR NIH HHS P41 RR012408NCRR NIH HHS P41RR012408NIGMS NIH HHS P41 GM103473NIGMS NIH HHS P41GM103473NIGMS NIH HHS P41 GM111244NIGMS NIH HHS Y1-GM-1104
6 · The paper itself

Abstract

X-ray diffraction data were obtained at the National Synchrotron Light Source from insulin and lysozyme crystals that were densely deposited on three types of surfaces suitable for serial micro-crystallography: MiTeGen MicroMeshes™, Greiner Bio-One Ltd in situ micro-plates, and a moving kapton crystal conveyor belt that is used to deliver crystals directly into the X-ray beam. 6° wedges of data were taken from ∼100 crystals mounted on each material, and these individual data sets were merged to form nine complete data sets (six from insulin crystals and three from lysozyme crystals). Insulin crystals have a parallelepiped habit with an extended flat face that preferentially aligned with the mounting surfaces, impacting the data collection strategy and the design of the serial crystallography apparatus. Lysozyme crystals had a cuboidal habit and showed no preferential orientation. Preferential orientation occluded regions of reciprocal space when the X-ray beam was incident normal to the data-collection medium surface, requiring a second pass of data collection with the apparatus inclined away from the orthogonal. In addition, crystals measuring less than 20 µm were observed to clump together into clusters of crystals. Clustering required that the X-ray beam be adjusted to match the crystal size to prevent overlapping diffraction patterns. No additional problems were encountered with the serial crystallography strategy of combining small randomly oriented wedges of data from a large number of specimens. High-quality data able to support a realistic molecular replacement solution were readily obtained from both crystal types using all three serial crystallography strategies.

Indexed as

Scattering, Small AngleCrystallography, X-RayHumansInsulinMuramidaseProstheses and ImplantsSolventsSynchrotronsX-Ray DiffractionInsulinMuramidaseSolventsacoustic droplet ejectioncrystallographyin situ X-ray data collectionserial crystallography

Identifiers

PMID25343789
PMCPMC4211130

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.