Evidence map›Paper›PMID 25343575›Full record

ArticleJournal of the American Chemical Society2014

Discovery of catalytic phages by biocatalytic self-assembly.

Yoshiaki Maeda, Nadeem Javid, Krystyna Duncan, Louise Birchall, Kirsty F Gibson, Daniel Cannon, Yuka Kanetsuki, Charles Knapp, Tell Tuttle, Rein V Ulijn and 1 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Site-selective peptide bond hydrolysis and ligation in water by short peptide-based assemblies.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Synergistic Interactions Are Prevalent in Catalytic Amyloids.Chembiochem : a European journal of chemical biology · 2020
    Article
  11. Biocatalysis of D,L-Peptide Nanofibrillar Hydrogel.Molecules (Basel, Switzerland) · 2020
    Article
  12. Article
  13. Catalytic peptide assemblies.Chemical Society reviews · 2018
    Review
  14. Article
  15. Short Self-Assembling Peptides Are Able to Bind to Copper and Activate Oxygen.Angewandte Chemie (International ed. in English) · 2016
    Article
  16. Review
  17. Review
  18. Biomimetic Crystallization of MnFeChemNanoMat : chemistry of nanomaterials for energy, biology and more · 2016
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yoshiaki MaedaDepartment of Chemistry and Biochemistry, Hunter College, City University of New York , 695 Park Avenue, New York, New York 10065, United States.
Nadeem Javid
Krystyna Duncan
Louise Birchall
Kirsty F Gibson
Daniel Cannon
Yuka Kanetsuki
Charles Knapp
Tell Tuttle
Rein V Ulijn
Hiroshi Matsui

Funding

Basic and Translational Research Center for Reducing Health DisparitiesG12MD007599 · NIMHD · HUNTER COLLEGE · PI ANGULO, JESUS A · 2012 to 2017
$14.6M
European Research Council 258775NIMHD NIH HHS G12 MD007599NIMHD NIH HHS MD007599
6 · The paper itself

Abstract

Discovery of new catalysts for demanding aqueous reactions is challenging. Here, we describe methodology for selection of catalytic phages by taking advantage of localized assembly of the product of the catalytic reaction that is screened for. A phage display library covering 10(9) unique dodecapeptide sequences is incubated with nonassembling precursors. Phages which are able to catalyze formation of the self-assembling reaction product (via amide condensation) acquire an aggregate of reaction product, enabling separation by centrifugation. The thus selected phages can be amplified by infection of Escherichia coli. These phages are shown to catalyze amide condensation and hydrolysis. Kinetic analysis shows a minor role for substrate binding. The approach enables discovery and mass-production of biocatalytic phages.

Indexed as

BiocatalysisAmidesAmino Acid SequenceBacteriophage M13Escherichia coliHydrolysisOligopeptidesAmidesOligopeptides

Identifiers

PMID25343575
PMCPMC6390487

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.