Evidence map›Paper›PMID 25343245›Full record

ArticlePloS one2014

Generation of a recombinant Gag virus-like-particle panel for the evaluation of p24 antigen detection by diagnostic HIV tests.

Beatrice N Vetter, Vanessa Orlowski, Katrien Fransen, Christoph Niederhauser, Vincent Aubert, Marcel Brandenberger, Diana Ciardo, Günter Dollenmaier, Thomas Klimkait, Stephan Regenass and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. The fourth generation AlereJournal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 11 institutions in 3 countries.

Beatrice N VetterSwiss National Center for Retroviruses (SNCR), Institute of Medical Virology, University of Zürich, Zürich, Switzerland.
Vanessa OrlowskiSwiss National Center for Retroviruses (SNCR), Institute of Medical Virology, University of Zürich, Zürich, Switzerland.
Katrien FransenInstitute of Tropical Medicine (ITG), Clinical Science, Antwerp, Belgium.
Christoph NiederhauserBlood Transfusion Service, Swiss Red Cross Berne (BSDSRK), Berne, Switzerland.
Vincent AubertUniversity Hospital, Service of Immunology and Allergy, CHUV, Lausanne, Switzerland.
Marcel BrandenbergerLabor Synlab Luzern, Lucerne, Switzerland.
Diana CiardoViollier AG, Allschwil, Switzerland.
Günter DollenmaierCenter for Laboratory Medicine (ZLMSG), St. Gallen, Switzerland.
Thomas KlimkaitDepartment Biomedicine, Haus Petersplatz, University of Basel, Basel, Switzerland.
Stephan RegenassUniversity Hospital, Clinic for Immunology, Zurich, Switzerland.
Patrick SchmidDepartment of Infectious Diseases, Cantonal Hospital St. Gallen (KSSG), St. Gallen, Switzerland.
Volkmar SchottstedtGerman Red Cross Blood Transfusion Service West (DRK), Hagen, Germany.
Franziska Suter-RinikerUniversity of Berne, Institute of Infectious Diseases, Berne, Switzerland.
Sabine YerlyUniversity Hospitals (HUG), Laboratory of Virology, Genève, Switzerland.
Cyril ShahSwiss National Center for Retroviruses (SNCR), Institute of Medical Virology, University of Zürich, Zürich, Switzerland.
Jürg BöniSwiss National Center for Retroviruses (SNCR), Institute of Medical Virology, University of Zürich, Zürich, Switzerland.
Jörg SchüpbachSwiss National Center for Retroviruses (SNCR), Institute of Medical Virology, University of Zürich, Zürich, Switzerland.
University of Zurich · CHUniversity of St. Gallen · CHGerman Red Cross · DEInstituut voor Tropische Geneeskunde · BESwiss Red Cross · CHUniversity Hospital of Lausanne · CHUniversity Hospital of Zurich · CHUniversity of Basel · CHUniversity of Bern · CHUniversity of Geneva · CHUniversity of Teacher Education Lucerne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDetection of HIV-1 p24 antigen permits early identification of primary HIV infection and timely intervention to limit further spread of the infection. Principally, HIV screening should equally detect all viral variants, but reagents for a standardised test evaluation are limited. Therefore, we aimed to create an inexhaustible panel of diverse HIV-1 p24 antigens.

methodsWe generated a panel of 43 recombinantly expressed virus-like particles (VLPs), containing the structural Gag proteins of HIV-1 subtypes A-H and circulating recombinant forms (CRF) CRF01_AE, CRF02_AG, CRF12_BF, CRF20_BG and group O. Eleven 4th generation antigen/antibody tests and five antigen-only tests were evaluated for their ability to detect VLPs diluted in human plasma to p24 concentrations equivalent to 50, 10 and 2 IU/ml of the WHO p24 standard. Three tests were also evaluated for their ability to detect p24 after heat-denaturation for immune-complex disruption, a pre-requisite for ultrasensitive p24 detection.

resultsOur VLP panel exhibited an average intra-clade p24 diversity of 6.7%. Among the 4th generation tests, the Abbott Architect and Siemens Enzygnost Integral 4 had the highest sensitivity of 97.7% and 93%, respectively. Alere Determine Combo and BioRad Access were least sensitive with 10.1% and 40.3%, respectively. Antigen-only tests were slightly more sensitive than combination tests. Almost all tests detected the WHO HIV-1 p24 standard at a concentration of 2 IU/ml, but their ability to detect this input for different subtypes varied greatly. Heat-treatment lowered overall detectability of HIV-1 p24 in two of the three tests, but only few VLPs had a more than 3-fold loss in p24 detection.

conclusionsThe HIV-1 Gag subtype panel has a broad diversity and proved useful for a standardised evaluation of the detection limit and breadth of subtype detection of p24 antigen-detecting tests. Several tests exhibited problems, particularly with non-B subtypes.

Indexed as

Reagent Kits, DiagnosticAmino Acid Sequencegag Gene Products, Human Immunodeficiency VirusHIV AntigensHIV Core Protein p24HIV InfectionsHumansMolecular Sequence DataPhylogenyProtein DenaturationRecombinant ProteinsViriongag Gene Products, Human Immunodeficiency VirusHIV AntigensHIV Core Protein p24Reagent Kits, DiagnosticRecombinant Proteins

Identifiers

PMID25343245
PMCPMC4208835
OpenAlexW2077132159

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.