Evidence map›Paper›PMID 25342723›Full record

ArticleGenome research2015

Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin.

Oksana Maksimenko, Marek Bartkuhn, Viacheslav Stakhov, Martin Herold, Nickolay Zolotarev, Theresa Jox, Melanie K Buxa, Ramona Kirsch, Artem Bonchuk, Anna Fedotova and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 132 citations in OpenAlex.

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  15. Multiple Roles of dXNP and dADD1-International journal of molecular sciences · 2023
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  16. The N-Terminal Part ofInternational journal of molecular sciences · 2023
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  20. Mechanisms of Interaction between Enhancers and Promoters in ThreeInternational journal of molecular sciences · 2023
    Review

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Oksana MaksimenkoLaboratory of Gene Expression Regulation in Development, Institute of Gene Biology, Russian Academy of Sciences, Moscow 119334, Russia;
Marek BartkuhnInstitute for Genetics, Justus-Liebig-University Giessen, Heinrich-Buff-Ring, D-35392 Giessen, Germany;
Viacheslav StakhovLaboratory of Gene Expression Regulation in Development, Institute of Gene Biology, Russian Academy of Sciences, Moscow 119334, Russia;
Martin HeroldInstitute for Genetics, Justus-Liebig-University Giessen, Heinrich-Buff-Ring, D-35392 Giessen, Germany;
Nickolay ZolotarevLaboratory of Gene Expression Regulation in Development, Institute of Gene Biology, Russian Academy of Sciences, Moscow 119334, Russia;
Theresa JoxInstitute for Genetics, Justus-Liebig-University Giessen, Heinrich-Buff-Ring, D-35392 Giessen, Germany;
Melanie K BuxaInstitute for Genetics, Justus-Liebig-University Giessen, Heinrich-Buff-Ring, D-35392 Giessen, Germany;
Ramona KirschInstitute for Genetics, Justus-Liebig-University Giessen, Heinrich-Buff-Ring, D-35392 Giessen, Germany;
Artem BonchukGroup of Transcriptional Regulation, Institute of Gene Biology, Russian Academy of Sciences, Moscow 119334, Russia;
Anna FedotovaLaboratory of Gene Expression Regulation in Development, Institute of Gene Biology, Russian Academy of Sciences, Moscow 119334, Russia;
Olga KyrchanovaGroup of Transcriptional Regulation, Institute of Gene Biology, Russian Academy of Sciences, Moscow 119334, Russia;
Rainer RenkawitzInstitute for Genetics, Justus-Liebig-University Giessen, Heinrich-Buff-Ring, D-35392 Giessen, Germany; georgiev_p@mail.ru Rainer.Renkawitz@gen.bio.uni-giessen.de olgina73@yandex.ru.
Pavel GeorgievDepartment of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow 119334, Russia georgiev_p@mail.ru Rainer.Renkawitz@gen.bio.uni-giessen.de olgina73@yandex.ru.
Justus-Liebig-Universität Gießen · DERussian Academy of Sciences · RUInstitute of Gene Biology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Insulators are multiprotein-DNA complexes that regulate the nuclear architecture. The Drosophila CP190 protein is a cofactor for the DNA-binding insulator proteins Su(Hw), CTCF, and BEAF-32. The fact that CP190 has been found at genomic sites devoid of either of the known insulator factors has until now been unexplained. We have identified two DNA-binding zinc-finger proteins, Pita, and a new factor named ZIPIC, that interact with CP190 in vivo and in vitro at specific interaction domains. Genomic binding sites for these proteins are clustered with CP190 as well as with CTCF and BEAF-32. Model binding sites for Pita or ZIPIC demonstrate a partial enhancer-blocking activity and protect gene expression from PRE-mediated silencing. The function of the CTCF-bound MCP insulator sequence requires binding of Pita. These results identify two new insulator proteins and emphasize the unifying function of CP190, which can be recruited by many DNA-binding insulator proteins.

Indexed as

Zinc FingersAnimalsBinding SitesChromatinChromosome MappingDNA-Binding ProteinsDrosophilaDrosophila ProteinsGene ExpressionGenetic Association StudiesGenomicsMicrotubule-Associated ProteinsNuclear ProteinsPromoter Regions, GeneticTranscription FactorsChromatinCP190 protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsMicrotubule-Associated ProteinsNuclear Proteinspita protein, DrosophilaTranscription FactorsZIPIC protein, Drosophila

Identifiers

PMID25342723
PMCPMC4317163
OpenAlexW2069846493

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.