Evidence map›Paper›PMID 25341194›Full record

ArticleJournal of medicinal chemistry2014

Structure-guided development of deoxycytidine kinase inhibitors with nanomolar affinity and improved metabolic stability.

Julian Nomme, Zheng Li, Raymond M Gipson, Jue Wang, Amanda L Armijo, Thuc Le, Soumya Poddar, Tony Smith, Bernard D Santarsiero, Hien-Anh Nguyen and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. STING-driven interferon signaling triggers metabolic alterations in pancreas cancer cells visualized by [Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Article
  6. Article
  7. Human Biodistribution and Radiation Dosimetry ofJournal of nuclear medicine : official publication, Society of Nuclear Medicine · 2017
    Article
  8. [18F]CFA as a clinically translatable probe for PET imaging of deoxycytidine kinase activity.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Julian NommeDepartment of Biochemistry and Molecular Genetics, and ‡Center for Pharmaceutical Biotechnology, University of Illinois at Chicago , Chicago, Illinois 60607, United States.
Zheng Li
Raymond M Gipson
Jue Wang
Amanda L Armijo
Thuc Le
Soumya Poddar
Tony Smith
Bernard D Santarsiero
Hien-Anh Nguyen
Johannes Czernin
Anastassia N Alexandrova
Michael E Jung
Caius G Radu
Arnon Lavie
University of California, Los Angeles · USUniversity of Illinois Chicago · US

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
Transductionally Redirected /Transcriptionally RestricteP50CA086306 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HERSCHMAN, HARVEY R. · 2000 to 2014
$29.0M
QUANTITATIVE IMAGE ANALYSIS SPECIALIZED RESOURCE COREU54CA119347 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI WITTE, OWEN N. · 2005 to 2009
$17.8M
Molecular imaging of cell-based therapeutics using an engineered human enzyme.R01EB013685 · NIBIB · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LAVIE, ARNON · 2011 to 2014
$1.4M
NCI NIH HHS P30 CA016042NCI NIH HHS P50 CA086306NCI NIH HHS U54 CA119347NIBIB NIH HHS R01 EB013685
6 · The paper itself

Abstract

Recently, we have shown that small molecule dCK inhibitors in combination with pharmacological perturbations of de novo dNTP biosynthetic pathways could eliminate acute lymphoblastic leukemia cells in animal models. However, our previous lead compound had a short half-life in vivo. Therefore, we set out to develop dCK inhibitors with favorable pharmacokinetic properties. We delineated the sites of the inhibitor for modification, guided by crystal structures of dCK in complex with the lead compound and with derivatives. Crystal structure of the complex between dCK and the racemic mixture of our new lead compound indicated that the R-isomer is responsible for kinase inhibition. This was corroborated by kinetic analysis of the purified enantiomers, which showed that the R-isomer has >60-fold higher affinity than the S-isomer for dCK. This new lead compound has significantly improved metabolic stability, making it a prime candidate for dCK-inhibitor based therapies against hematological malignancies and, potentially, other cancers.

Indexed as

AnimalsAntineoplastic AgentsBinding SitesChemistry, PharmaceuticalComputer SimulationCrystallography, X-RayDeoxycytidineDeoxycytidine KinaseDrug DesignFemaleHumansInhibitory Concentration 50MiceMice, Inbred C57BLMicrosomesPhosphorylationAntineoplastic AgentsDeoxycytidineDeoxycytidine KinaseProtein Kinase InhibitorsThiazoles

Identifiers

PMID25341194
PMCPMC4255734
OpenAlexW2076889342

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.