Evidence map›Paper›PMID 25341113›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2015

Contribution of copy-number variation to Down syndrome-associated atrioventricular septal defects.

Dhanya Ramachandran, Jennifer G Mulle, Adam E Locke, Lora J H Bean, Tracie C Rosser, Promita Bose, Kenneth J Dooley, Clifford L Cua, George T Capone, Roger H Reeves and 4 more

Abstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  11. Influence of allelic differences in Down syndrome.Progress in brain research · 2020
    Review
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  13. Article
  14. Article
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  17. The Complex Genetic Basis of Congenital Heart Defects.Circulation journal : official journal of the Japanese Circulation Society · 2017
    Review
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Dhanya RamachandranDepartment of Human Genetics, Emory University, Atlanta, Georgia, USA.ORCID 0000000291767623
Jennifer G Mulle1] Department of Human Genetics, Emory University, Atlanta, Georgia, USA [2] Department of Epidemiology, Rollins School of Public Health, Emory University, Atlanta, Georgia, USA.
Adam E Locke1] Genetics and Molecular Biology Graduate Program, Graduate Division of Biological and Biomedical Sciences, Laney Graduate School, Emory University, Atlanta, Georgia, USA [2] Current address: Center for Statistical Genetics and Department of Biostatistics, University of Michigan School of Public Health, Ann Arbor, Michigan, USA.ORCID 000000016227198X
Lora J H BeanDepartment of Human Genetics, Emory University, Atlanta, Georgia, USA.
Tracie C RosserDepartment of Human Genetics, Emory University, Atlanta, Georgia, USA.
Promita BoseDepartment of Human Genetics, Emory University, Atlanta, Georgia, USA.
Kenneth J DooleySibley Heart Center Cardiology, Department of Pediatrics, Children's Hospital of Atlanta, Emory University, Atlanta, Georgia, USA.
Clifford L CuaHeart Center, Nationwide Children's Hospital, Columbus, Ohio, USA.
George T CaponeDown Syndrome Clinic and Research Center, Kennedy Krieger Institute, Baltimore, Maryland, USA.ORCID 000000017018101X
Roger H ReevesDepartment of Physiology and McKusick Nathans Institute for Genetic Medicine, School of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.ORCID 0000000286309679
Cheryl L MaslenKnight Cardiovascular Institute, and Department of Molecular and Medical Genetics, Oregon Health & Science University, Portland, Oregon, USA.ORCID 0000000291723874
David J CutlerDepartment of Human Genetics, Emory University, Atlanta, Georgia, USA.
Stephanie L ShermanDepartment of Human Genetics, Emory University, Atlanta, Georgia, USA.
Michael E ZwickDepartment of Human Genetics, Emory University, Atlanta, Georgia, USA.
Emory University · USJohns Hopkins University · USKennedy Krieger Institute · USNationwide Children's Hospital · USOregon Health & Science University · US

Funding

OREGON CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024140 · NCRR · OREGON HEALTH & SCIENCE UNIVERSITY · PI ORWOLL, ERIC S. · 2006 to 2011
$61.1M
Oregon Clinical and Translational Research InstituteUL1TR000128 · NCATS · OREGON HEALTH & SCIENCE UNIVERSITY · PI ELLISON, DAVID H · 2012 to 2015
$28.7M
TRISOMY 21: RISK FACTORS FOR CHROMOSOME NONDISJUNCTIONR01HD038979 · NICHD · EMORY UNIVERSITY · PI FEINGOLD, ELEANOR, SHERMAN, STEPHANIE L. · 2000 to 2013
$11.2M
Genetic basis for congenital heart defectsR01HL083300 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI REEVES, ROGER H · 2007 to 2011
$5.6M
Copy Number Variation as a Cause of Congenital Heart Defects in Down SyndromeR01HL092981 · NHLBI · EMORY UNIVERSITY · PI ZWICK, MICHAEL E. · 2009 to 2013
$3.5M
Training Program in Human Disease GeneticsT32MH087977 · NIMH · EMORY UNIVERSITY · PI WARREN, STEPHEN T. · 2009 to 2013
$1.3M
NCATS NIH HHS UL1 TR000128NCRR NIH HHS UL1 RR024140NHLBI NIH HHS R01 HL083300NHLBI NIH HHS R01 HL092981NHLBI NIH HHS R01 HL092981-01A1NICHD NIH HHS R01 HD038979NICHD NIH HHS R01 HD38979NIMH NIH HHS 1T32MH087977NIMH NIH HHS T32 MH087977
6 · The paper itself

Abstract

purposeThe goal of this study was to identify the contribution of large copy-number variants to Down syndrome-associated atrioventricular septal defects, the risk for which in the trisomic population is 2,000-fold more as compared with that of the general disomic population.

methodsGenome-wide copy-number variant analysis was performed on 452 individuals with Down syndrome (210 cases with complete atrioventricular septal defects; 242 controls with structurally normal hearts) using Affymetrix SNP 6.0 arrays, making this the largest heart study conducted to date on a trisomic background.

resultsLarge, common copy-number variants with substantial effect sizes (OR > 2.0) do not account for the increased risk observed in Down syndrome-associated atrioventricular septal defects. By contrast, cases had a greater burden of large, rare deletions (P < 0.01) and intersected more genes (P < 0.007) as compared with controls. We also observed a suggestive enrichment of deletions intersecting ciliome genes in cases as compared with controls.

conclusionOur data provide strong evidence that large, rare deletions increase the risk of Down syndrome-associated atrioventricular septal defects, whereas large, common copy-number variants do not appear to increase the risk of Down syndrome-associated atrioventricular septal defects. The genetic architecture of atrioventricular septal defects is complex and multifactorial in nature.

Indexed as

DNA Copy Number VariationsCase-Control StudiesDown SyndromeGenetic Association StudiesHeart Septal DefectsHumansWhite People

Identifiers

PMID25341113
PMCPMC4408203
OpenAlexW2145322662

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.