Evidence map›Paper›PMID 25340873›Full record

ArticlePLoS genetics2014

Identification of genes important for cutaneous function revealed by a large scale reverse genetic screen in the mouse.

Tia DiTommaso, Lynelle K Jones, Denny L Cottle, WTSI Mouse Genetics Program, Anna-Karin Gerdin, Valerie E Vancollie, Fiona M Watt, Ramiro Ramirez-Solis, Allan Bradley, Karen P Steel and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  12. MYSM-1 suppresses migration and invasion in renal carcinoma through inhibiting epithelial-mesenchymal transition.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  13. Mouse genome-wide association study identifies polymorphisms on chromosomes 4, 11, and 15 for age-related cardiac fibrosis.Mammalian genome : official journal of the International Mammalian Genome Society · 2016
    Article
  14. Article
  15. Excavating the Genome: Large-Scale Mutagenesis Screening for the Discovery of New Mouse Models.The journal of investigative dermatology. Symposium proceedings · 2015
    Review
  16. Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Tia DiTommasoDepartment of Biochemistry and Molecular Biology, Monash University, Clayton, Melbourne, Australia.
Lynelle K JonesDepartment of Biochemistry and Molecular Biology, Monash University, Clayton, Melbourne, Australia.
Denny L CottleDepartment of Biochemistry and Molecular Biology, Monash University, Clayton, Melbourne, Australia.
WTSI Mouse Genetics Program
Anna-Karin GerdinWellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom.
Valerie E VancollieWellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom.
Fiona M WattCentre for Stem Cells and Regenerative Medicine King's College London, Guy's Hospital, London, United Kingdom.
Ramiro Ramirez-SolisWellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom.
Allan BradleyWellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom.
Karen P SteelWellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom; Wolfson Centre for Age-Related Diseases, King's College London, Guy's Campus, London, United Kingdom.
John P SundbergThe Jackson Laboratory, Bar Harbor, Maine, United States of America.
Jacqueline K WhiteWellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom.
Ian M SmythDepartment of Biochemistry and Molecular Biology, Monash University, Clayton, Melbourne, Australia; Department of Anatomy and Developmental Biology, Monash University, Clayton, Melbourne, Australia.
Wellcome Sanger Institute · GBMonash University · AUGuy's Hospital · GBKing's College London · GB

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
Cpdm: Cloning a Gene That Regulates Eosinophil FunctionR01AR049288 · NIAMS · JACKSON LABORATORY · PI BOWCOCK, ANNE MARY, HOGENESCH, HARM · 2004 to 2016
$5.9M
Genetics of Alopecia Areata in the C3H/HeJ MouseR01AR056635 · NIAMS · JACKSON LABORATORY · PI SUNDBERG, JOHN PAUL · 2010 to 2014
$1.9M
Discovering Novel Gene Networks for Skin DiseasesR21AR063781 · NIAMS · JACKSON LABORATORY · PI SUNDBERG, JOHN PAUL · 2013 to 2014
$422k
Medical Research Council G0300212Medical Research Council MC_QA137918NCI NIH HHS P30 CA034196NIAMS NIH HHS AR063781NIAMS NIH HHS R01 AR049288NIAMS NIH HHS R01 AR056635NIAMS NIH HHS R21 AR063781Wellcome Trust 096540Wellcome Trust 098051Wellcome Trust 100669
6 · The paper itself

Abstract

The skin is a highly regenerative organ which plays critical roles in protecting the body and sensing its environment. Consequently, morbidity and mortality associated with skin defects represent a significant health issue. To identify genes important in skin development and homeostasis, we have applied a high throughput, multi-parameter phenotype screen to the conditional targeted mutant mice generated by the Wellcome Trust Sanger Institute's Mouse Genetics Project (Sanger-MGP). A total of 562 different mouse lines were subjected to a variety of tests assessing cutaneous expression, macroscopic clinical disease, histological change, hair follicle cycling, and aberrant marker expression. Cutaneous lesions were associated with mutations in 23 different genes. Many of these were not previously associated with skin disease in the organ (Mysm1, Vangl1, Trpc4ap, Nom1, Sparc, Farp2, and Prkab1), while others were ascribed new cutaneous functions on the basis of the screening approach (Krt76, Lrig1, Myo5a, Nsun2, and Nf1). The integration of these skin specific screening protocols into the Sanger-MGP primary phenotyping pipelines marks the largest reported reverse genetic screen undertaken in any organ and defines approaches to maximise the productivity of future projects of this nature, while flagging genes for further characterisation.

Indexed as

PhenotypeAnimalsEmbryonic Stem CellsHair FollicleMiceMutationReverse GeneticsSkin Physiological Phenomena

Identifiers

PMID25340873
PMCPMC4207618
OpenAlexW2025800379

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.