Evidence map›Paper›PMID 25340822›Full record

ArticlePLoS genetics2014

Ancient expansion of the hox cluster in lepidoptera generated four homeobox genes implicated in extra-embryonic tissue formation.

Laura Ferguson, Ferdinand Marlétaz, Jean-Michel Carter, William R Taylor, Melanie Gibbs, Casper J Breuker, Peter W H Holland

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 67 citations in OpenAlex.

  1. Escaping Constraints to Innovate: Maternal Neofunctionalization in a HoxB4 Duplicate.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2026
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  4. eLife · 2024
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  5. Analysis of theCell genomics · 2023
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  9. Early embryonic development of Bombyx.Development genes and evolution · 2021
    Review
  10. Article
  11. Article
  12. Article
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  14. Article
  15. Article
  16. Article
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  18. Multiple large-scale gene and genome duplications during the evolution of hexapods.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. New genes from old: asymmetric divergence of gene duplicates and the evolution of development.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Laura FergusonDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
Ferdinand MarlétazDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
Jean-Michel CarterEvolutionary Developmental Biology Research Group, Faculty of Health and Life Sciences, Department of Biological and Medical Sciences, Oxford Brookes University, Headington, Oxford, United Kingdom.
William R TaylorMRC National Institute for Medical Research, Mill Hill, London, United Kingdom.
Melanie GibbsNERC Centre for Ecology and Hydrology, Wallingford, Oxfordshire, United Kingdom.
Casper J BreukerEvolutionary Developmental Biology Research Group, Faculty of Health and Life Sciences, Department of Biological and Medical Sciences, Oxford Brookes University, Headington, Oxford, United Kingdom.
Peter W H HollandDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
University of Oxford · GBOxford Brookes University · GBUK Centre for Ecology & Hydrology · GB

Funding

Medical Research CouncilWellcome Trust
6 · The paper itself

Abstract

Gene duplications within the conserved Hox cluster are rare in animal evolution, but in Lepidoptera an array of divergent Hox-related genes (Shx genes) has been reported between pb and zen. Here, we use genome sequencing of five lepidopteran species (Polygonia c-album, Pararge aegeria, Callimorpha dominula, Cameraria ohridella, Hepialus sylvina) plus a caddisfly outgroup (Glyphotaelius pellucidus) to trace the evolution of the lepidopteran Shx genes. We demonstrate that Shx genes originated by tandem duplication of zen early in the evolution of large clade Ditrysia; Shx are not found in a caddisfly and a member of the basally diverging Hepialidae (swift moths). Four distinct Shx genes were generated early in ditrysian evolution, and were stably retained in all descendent Lepidoptera except the silkmoth which has additional duplications. Despite extensive sequence divergence, molecular modelling indicates that all four Shx genes have the potential to encode stable homeodomains. The four Shx genes have distinct spatiotemporal expression patterns in early development of the Speckled Wood butterfly (Pararge aegeria), with ShxC demarcating the future sites of extraembryonic tissue formation via strikingly localised maternal RNA in the oocyte. All four genes are also expressed in presumptive serosal cells, prior to the onset of zen expression. Lepidopteran Shx genes represent an unusual example of Hox cluster expansion and integration of novel genes into ancient developmental regulatory networks.

Indexed as

Evolution, MolecularGene DuplicationGene Regulatory NetworksAnimalsBombyxButterfliesGene Expression Regulation, DevelopmentalGenomeHigh-Throughput Nucleotide SequencingHomeodomain ProteinsLepidopteraMultigene FamilyPhylogenyHomeodomain Proteins

Identifiers

PMID25340822
PMCPMC4207634
OpenAlexW1972708928

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Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.