Evidence map›Paper›PMID 25340800›Full record

ArticlePloS one2014

New insights into regulation of proteome and polysaccharide in cell wall of Elsholtzia splendens in response to copper stress.

Tingting Liu, Chaofeng Shen, Yi Wang, Canke Huang, Jiyan Shi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 48 citations in OpenAlex.

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  15. Cell Wall Metabolism in Response to Abiotic Stress.Plants (Basel, Switzerland) · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Tingting LiuInstitute of Environmental Science and Technology, College of Environmental and Resource Sciences, Zhejiang University Hangzhou, P.R. China.
Chaofeng ShenInstitute of Environmental Science and Technology, College of Environmental and Resource Sciences, Zhejiang University Hangzhou, P.R. China.
Yi WangInstitute of Environmental Science and Technology, College of Environmental and Resource Sciences, Zhejiang University Hangzhou, P.R. China.
Canke HuangInstitute of Environmental Science and Technology, College of Environmental and Resource Sciences, Zhejiang University Hangzhou, P.R. China.
Jiyan ShiInstitute of Environmental Science and Technology, College of Environmental and Resource Sciences, Zhejiang University Hangzhou, P.R. China.
Zhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

aimsCopper (Cu) is an essential micronutrient for plants. However, excess amounts of Cu are toxic and result in a wide range of harmful effects on the physiological and biochemical processes of plants. Cell wall has a crucial role in plant defense response to toxic metals. To date, the process of cell wall response to Cu and the detoxification mechanism have not been well documented at the proteomic level.

methodsAn recently developed 6-plex Tandem Mass Tag was used for relative and absolute quantitation methods to achieve a comprehensive understanding of Cu tolerance/detoxification molecular mechanisms in the cell wall. LC-MS/MS approach was performed to analyze the Cu-responsive cell wall proteins and polysaccharides. KEY

resultsThe majority of the 22 up-regulated proteins were involved in the antioxidant defense pathway, cell wall polysaccharide remodeling, and cell metabolism process. Changes in polysaccharide amount, composition, and distribution could offer more binding sites for Cu ions. The 33 down-regulated proteins were involved in the signal pathway, energy, and protein synthesis.

conclusionsBased on the abundant changes in proteins and polysaccharides, and their putative functions, a possible protein interaction network can provide new insights into Cu stress response in root cell wall. Cu can facilitate further functional research on target proteins associated with metal response in the cell wall.

Indexed as

Cell WallChromatography, LiquidCluster AnalysisCopperGene OntologyIonsLamiaceaeMetabolic Networks and PathwaysMolecular Sequence AnnotationPlant ProteinsPlant RootsPolysaccharidesProteomeStress, PhysiologicalTandem Mass SpectrometryCopperIonsPlant ProteinsPolysaccharidesProteome

Identifiers

PMID25340800
PMCPMC4207692
OpenAlexW2137580955

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.