ArticlePloS one2014
Comparative transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 provide insights into mechanisms of stress acclimation.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 57 citations in OpenAlex.
- Exploring the regulatory potential of RNA structures in 202 cyanobacterial genomes.Nucleic acids research · 2026Article
- CyanoTag: Discovery of protein function facilitated by high-throughput endogenous tagging in a photosynthetic prokaryote.Science advances · 2025Article
- A green microbe for a sustainable future: the versatile applications ofSustainable microbiology · 2025Review
- Bacteria can anticipate the seasons: Photoperiodism in cyanobacteria.Science (New York, N.Y.) · 2024Article
- Bacteria can anticipate the seasons: photoperiodism in cyanobacteria.bioRxiv : the preprint server for biology · 2024Article
- Impact of irradiance and inorganic carbon availability on heterologous sucrose production inFrontiers in plant science · 2024Article
- Characterization of a novel thermophilic cyanobacterium withinFrontiers in microbiology · 2023Article
- Improved salt tolerance ofFrontiers in microbiology · 2023Article
- Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains.mBio · 2022Article
- Transcriptomic and Phenomic Investigations Reveal Elements in Biofilm Repression and Formation in the CyanobacteriumFrontiers in microbiology · 2022Article
- Comparative Genomic Analysis Revealed Distinct Molecular Components and Organization of COFrontiers in microbiology · 2022Article
- Integrative analysis of the salt stress response in cyanobacteria.Biology direct · 2021Article
- Selective molecular transport across the protein shells of bacterial microcompartments.Current opinion in microbiology · 2021Review
- Restoration, conservation and phytoplankton hysteresis.Conservation physiology · 2021Article
- Blue light induces major changes in the gene expression profile of the cyanobacterium Synechocystis sp. PCC 6803.Physiologia plantarum · 2020Article
- Episodic Decrease in Temperature IncreasesFrontiers in microbiology · 2020Article
- Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315.Scientific reports · 2019Article
- Heterohexamers Formed by CcmK3 and CcmK4 Increase the Complexity of Beta Carboxysome Shells.Plant physiology · 2019Article
- The future of genomics in polar and alpine cyanobacteria.FEMS microbiology ecology · 2018Article
- Comparative Genomics of the Baltic Sea Toxic CyanobacteriaFrontiers in microbiology · 2018Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 5 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803 are model cyanobacteria from which the metabolism and adaptive responses of other cyanobacteria are inferred. Using stranded and 5' enriched libraries, we measured the gene expression response of cells transferred from reference conditions to stress conditions of decreased inorganic carbon, increased salinity, increased pH, and decreased illumination at 1-h and 24-h after transfer. We found that the specific responses of the two strains were by no means identical. Transcriptome profiles allowed us to improve the structural annotation of the genome i.e. identify possible missed genes (including anti-sense), alter gene coordinates and determine transcriptional units (operons). Finally, we predicted associations between proteins of unknown function and biochemical pathways by revealing proteins of known functions that are co-regulated with the unknowns. Future studies of these model organisms will benefit from the cataloging of their responses to environmentally relevant stresses, and improvements in their genome annotations found here.
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