Evidence map›Paper›PMID 25340635›Full record

ArticleACS chemical neuroscience2014

Molecular modeling of a tandem two pore domain potassium channel reveals a putative binding site for general anesthetics.

Edward J Bertaccini, Robert Dickinson, James R Trudell, Nicholas P Franks

Open access · greenAbstract read
In one paragraph

Article in ACS chemical neuroscience, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Synapse-Specific Trapping of SNARE Machinery Proteins in the AnesthetizedThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  2. Article
  3. Studies on the mechanism of general anesthesia.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. The CNS under pathophysiologic attack--examining the role of K₂p channels.Pflugers Archiv : European journal of physiology · 2015
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Edward J BertacciniDepartment of Anesthesia, ‡Beckman Center for Molecular and Genetic Medicine, Stanford University School of Medicine , Stanford, California 94305, United States.
Robert Dickinson
James R Trudell
Nicholas P Franks
VA Palo Alto Health Care System · US

Funding

Defining Alcohol Binding Sites in Ligand-Gated Ion ChannelsR01AA020980 · NIAAA · STANFORD UNIVERSITY · PI BERTACCINI, EDWARD J · 2013 to 2017
$1.6M
Biotechnology and Biological Sciences Research Council BB/G021619/1Medical Research Council G0901892NIAAA NIH HHS R01 AA020980NIAAA NIH HHS R01 AA020980-01A1
6 · The paper itself

Abstract

Anesthetics are thought to mediate a portion of their activity via binding to and modulation of potassium channels. In particular, tandem pore potassium channels (K2P) are transmembrane ion channels whose current is modulated by the presence of general anesthetics and whose genetic absence has been shown to confer a level of anesthetic resistance. While the exact molecular structure of all K2P forms remains unknown, significant progress has been made toward understanding their structure and interactions with anesthetics via the methods of molecular modeling, coupled with the recently released higher resolution structures of homologous potassium channels to act as templates. Such models reveal the convergence of amino acid regions that are known to modulate anesthetic activity onto a common three- dimensional cavity that forms a putative anesthetic binding site. The model successfully predicts additional important residues that are also involved in the putative binding site as validated by the results of suggested experimental mutations. Such a model can now be used to further predict other amino acid residues that may be intimately involved in the target-based structure-activity relationships that are necessary for anesthetic binding.

Indexed as

Models, MolecularAmino Acid SequenceAnesthetics, GeneralAnimalsBinding SitesComputational BiologyHalothaneHEK293 CellsHumansLymnaeaMutationPotassium Channels, Tandem Pore DomainStructure-Activity RelationshipTransfectionAnesthetics, GeneralHalothanePotassium Channels, Tandem Pore Domainanesthesiahomology modelingTandem pore potassium channel

Identifiers

PMID25340635
PMCPMC4306477
OpenAlexW2326123689

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.