Evidence map›Paper›PMID 25340352›Full record

ArticlePloS one2014

A polyketide synthase acyltransferase domain structure suggests a recognition mechanism for its hydroxymalonyl-acyl carrier protein substrate.

Hyunjun Park, Brian M Kevany, David H Dyer, Michael G Thomas, Katrina T Forest

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Prokaryotic PfaB is a terminal acyltransferase that determines the final PUFA product.Protein science : a publication of the Protein Society · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Interfacial plasticity facilitates high reaction rate ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Polyketide stereocontrol: a study in chemical biology.Beilstein journal of organic chemistry · 2017
    Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Hyunjun ParkDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Brian M KevanyDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
David H DyerDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Michael G ThomasDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Katrina T ForestDepartment of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
University of Wisconsin–Madison · US

Funding

TYPE IV PILI: STRUCTURAL ASPECTS OF THE ASSEMBLY MECHANIR01GM059721 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOREST, KATRINA T · 2000 to 2011
$2.3M
Discovering New Anti-Tuberculosis DrugsR01AI065850 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI THOMAS, MICHAEL GEORGE · 2006 to 2010
$1.5M
Functional analysis of the MbtH-like protein superfamilyR01GM100346 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOREST, KATRINA T, THOMAS, MICHAEL GEORGE · 2013 to 2016
$1.1M
NIAID NIH HHS AI065850NIAID NIH HHS R01 AI065850NIGMS NIH HHS GM100346NIGMS NIH HHS GM59721NIGMS NIH HHS R01 GM059721NIGMS NIH HHS R01 GM100346
6 · The paper itself

Abstract

We have previously shown that the acyl transferase domain of ZmaA (ZmaA-AT) is involved in the biosynthesis of the aminopolyol polyketide/nonribosomal peptide hybrid molecule zwittermicin A from cereus UW85, and that it specifically recognizes the precursor hydroxymalonyl-acyl carrier protein (ACP) and transfers the hydroxymalonyl extender unit to a downstream second ACP via a transacylated AT domain intermediate. We now present the X-ray crystal structure of ZmaA-AT at a resolution of 1.7 Å. The structure shows a patch of solvent-exposed hydrophobic residues in the area where the AT is proposed to interact with the precursor ACP. We addressed the significance of the AT/ACP interaction in precursor specificity of the AT by testing whether malonyl- or methylmalonyl-ACP can be recognized by ZmaA-AT. We found that the ACP itself biases extender unit selection. Until now, structural information for ATs has been limited to ATs specific for the CoA-linked precursors malonyl-CoA and (2S)-methylmalonyl-CoA. This work contributes to polyketide synthase engineering efforts by expanding our knowledge of AT/substrate interactions with the structure of an AT domain that recognizes an ACP-linked substrate, the rare hydroxymalonate. Our structure suggests a model in which ACP interaction with a hydrophobic motif promotes secondary structure formation at the binding site, and opening of the adjacent substrate pocket lid to allow extender unit binding in the AT active site.

Indexed as

Acyl Carrier ProteinAcyltransferasesAmino Acid MotifsBacillus cereusBacterial ProteinsCatalytic DomainCloning, MolecularCrystallography, X-RayMultienzyme ComplexesPeptidesPolyketide SynthasesProtein EngineeringProtein Structure, TertiarySubstrate SpecificityTartronatesAcyl Carrier ProteinAcyltransferasesBacterial ProteinsMultienzyme ComplexesPeptidesPolyketide SynthasesTartronateszwittermicin A

Identifiers

PMID25340352
PMCPMC4207774
OpenAlexW2062124724

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.