Evidence map›Paper›PMID 25340341›Full record

ArticlePloS one2014

Azoarcus sp. CIB, an anaerobic biodegrader of aromatic compounds shows an endophytic lifestyle.

Helga Fernández, Nicolás Prandoni, Mercedes Fernández-Pascual, Susana Fajardo, César Morcillo, Eduardo Díaz, Manuel Carmona

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 63 citations in OpenAlex.

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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Helga FernándezDepartment of Environmental Biology, Centro de Investigaciones Biológicas-CSIC, Madrid, Spain.
Nicolás PrandoniDepartment of Environmental Biology, Centro de Investigaciones Biológicas-CSIC, Madrid, Spain.
Mercedes Fernández-PascualPlant Protection Department, Instituto de Ciencias Agrarias-CSIC, Madrid, Spain.
Susana FajardoPlant Protection Department, Instituto de Ciencias Agrarias-CSIC, Madrid, Spain.
César MorcilloPlant Protection Department, Instituto de Ciencias Agrarias-CSIC, Madrid, Spain.
Eduardo DíazDepartment of Environmental Biology, Centro de Investigaciones Biológicas-CSIC, Madrid, Spain.
Manuel CarmonaDepartment of Environmental Biology, Centro de Investigaciones Biológicas-CSIC, Madrid, Spain.
Centro de Investigaciones Biológicas Margarita Salas · ESInstituto de Ciencias Agrarias · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEndophytic bacteria that have plant growth promoting traits are of great interest in green biotechnology. The previous thought that the Azoarcus genus comprises bacteria that fit into one of two major eco-physiological groups, either free-living anaerobic biodegraders of aromatic compounds or obligate endophytes unable to degrade aromatics under anaerobic conditions, is revisited here. METHODOLOGY/PRINCIPAL

findingsLight, confocal and electron microscopy reveal that Azoarcus sp. CIB, a facultative anaerobe β-proteobacterium able to degrade aromatic hydrocarbons under anoxic conditions, is also able to colonize the intercellular spaces of the rice roots. In addition, the strain CIB displays plant growth promoting traits such nitrogen fixation, uptake of insoluble phosphorus and production of indoleacetic acid. Therefore, this work demonstrates by the first time that a free-living bacterium able to degrade aromatic compounds under aerobic and anoxic conditions can share also an endophytic lifestyle. The phylogenetic analyses based on the 16S rDNA and nifH genes confirmed that obligate endophytes of the Azoarcus genus and facultative endophytes, such as Azoarcus sp. CIB, locate into different evolutionary branches. CONCLUSIONS/SIGNIFICANCE: This is the first report of a bacterium, Azoarcus sp. CIB, able to degrade anaerobically a significant number of aromatic compounds, some of them of great environmental concern, and to colonize the rice as a facultative endophyte. Thus, Azoarcus sp. CIB becomes a suitable candidate for a more sustainable agricultural practice and phytoremediation technology.

Indexed as

AnaerobiosisAzoarcusBiodegradation, EnvironmentalColony Count, MicrobialEndophytesHydrocarbons, AromaticIndoleacetic AcidsNitrogenaseNitrogen FixationOryzaPhosphatesPlant RootsSolubilityHydrocarbons, Aromaticindoleacetic acidIndoleacetic AcidsNitrogenasePhosphates

Identifiers

PMID25340341
PMCPMC4207700
OpenAlexW2135134576

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.