Evidence map›Paper›PMID 25339942›Full record

ArticleFrontiers in microbiology2014

Smarter vaccine design will circumvent regulatory T cell-mediated evasion in chronic HIV and HCV infection.

Leonard Moise, Frances Terry, Andres H Gutierrez, Ryan Tassone, Phyllis Losikoff, Stephen H Gregory, Chris Bailey-Kellogg, William D Martin, Anne S De Groot

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Towards a map of the immune system manipulation network byFrontiers in cellular and infection microbiology · 2025
    Review
  2. T-Cell Receptor Sequences Identify Combined Coxsackievirus-International journal of molecular sciences · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Leonard MoiseEpiVax, Inc. , Providence, RI, USA ; Institute for Immunology and Informatics, University of Rhode Island , Providence, RI, USA.
Frances TerryEpiVax, Inc. , Providence, RI, USA.
Andres H GutierrezInstitute for Immunology and Informatics, University of Rhode Island , Providence, RI, USA.
Ryan TassoneInstitute for Immunology and Informatics, University of Rhode Island , Providence, RI, USA.
Phyllis LosikoffDepartment of Medicine, Rhode Island Hospital and the Warren Alpert Medical School at Brown University , Providence, RI, USA.
Stephen H GregoryEpiVax, Inc. , Providence, RI, USA.
Chris Bailey-KelloggDepartment of Computer Science, Dartmouth College , Hanover, NH, USA.
William D MartinEpiVax, Inc. , Providence, RI, USA.
Anne S De GrootEpiVax, Inc. , Providence, RI, USA ; Institute for Immunology and Informatics, University of Rhode Island , Providence, RI, USA.
University of Rhode Island · USEpiVax (United States) · USProvidence College · USBrown University · USDartmouth College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite years of research, vaccines against HIV and HCV are not yet available, due largely to effective viral immunoevasive mechanisms. A novel escape mechanism observed in viruses that cause chronic infection is suppression of viral-specific effector CD4(+) and CD8(+) T cells by stimulating regulatory T cells (Tregs) educated on host sequences during tolerance induction. Viral class II MHC epitopes that share a T cell receptor (TCR)-face with host epitopes may activate Tregs capable of suppressing protective responses. We designed an immunoinformatic algorithm, JanusMatrix, to identify such epitopes and discovered that among human-host viruses, chronic viruses appear more human-like than viruses that cause acute infection. Furthermore, an HCV epitope that activates Tregs in chronically infected patients, but not clearers, shares a TCR-face with numerous human sequences. To boost weak CD4(+) T cell responses associated with persistent infection, vaccines for HIV and HCV must circumvent potential Treg activation that can handicap efficacy. Epitope-driven approaches to vaccine design that involve careful consideration of the T cell subsets primed during immunization will advance HIV and HCV vaccine development.

Indexed as

cross-reactivityHCVHIVimmunoinformaticsMHC class IIregulatory T cellsT cell epitopevaccines

Identifiers

PMID25339942
PMCPMC4186478
OpenAlexW1968223268

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.