Evidence map›Paper›PMID 25339878›Full record

ArticleFrontiers in behavioral neuroscience2014

An open-source toolbox for automated phenotyping of mice in behavioral tasks.

Tapan P Patel, David M Gullotti, Pepe Hernandez, W Timothy O'Brien, Bruce P Capehart, Barclay Morrison, Cameron Bass, James E Eberwine, Ted Abel, David F Meaney

Open access · goldAbstract read
In one paragraph

Article in Frontiers in behavioral neuroscience, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 109 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Effect of Combined Levothyroxine (L-TInternational journal of molecular sciences · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Basal Forebrain Cholinergic Neurons Selectively Drive Coordinated Motor Learning in Mice.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  10. Article
  11. Genetic variability affects the response of skeletal muscle to disuse.Journal of musculoskeletal & neuronal interactions · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Rigor and reproducibility in rodent behavioral research.Neurobiology of learning and memory · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Tapan P PatelDepartment of Bioengineering, University of Pennsylvania Philadelphia, PA, USA.
David M GullottiDepartment of Bioengineering, University of Pennsylvania Philadelphia, PA, USA.
Pepe HernandezDepartment of Biology, University of Pennsylvania Philadelphia, PA, USA.
W Timothy O'BrienDepartment of Neuroscience, University of Pennsylvania Philadelphia, PA, USA.
Bruce P CapehartDepartment of Psychiatry and Behavioral Sciences, Duke University Durham, NC, USA.
Barclay MorrisonDepartment of Biomedical Engineering, Columbia University New York, NY, USA.
Cameron BassDepartment of Biomedical Engineering, Duke University Durham, NC, USA.
James E EberwineDepartment of Pharmacology, University of Pennsylvania Philadelphia, PA, USA.
Ted AbelDepartment of Biology, University of Pennsylvania Philadelphia, PA, USA.
David F MeaneyDepartment of Bioengineering, University of Pennsylvania Philadelphia, PA, USA ; Department of Neurosurgery, University of Pennsylvania Philadelphia, PA, USA.
University of Pennsylvania · USDuke University · USColumbia University · US

Funding

The Role of HIF-1 in Neurogenic and Behavior Responses to Antidepressants.R21MH099648 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI O'BRIEN, WILLIAM TIMOTHY · 2012 to 2013
$432k
NIMH NIH HHS R21 MH099648
6 · The paper itself

Abstract

Classifying behavior patterns in mouse models of neurological, psychiatric and neurodevelopmental disorders is critical for understanding disease causality and treatment. However, complete characterization of behavior is time-intensive, prone to subjective scoring, and often requires specialized equipment. Although several reports describe automated home-cage monitoring and individual task scoring methods, we report the first open source, comprehensive toolbox for automating the scoring of several common behavior tasks used by the neuroscience community. We show this new toolbox is robust and achieves equal or better consistency when compared to manual scoring methods. We use this toolbox to study the alterations in behavior that occur following blast-induced traumatic brain injury (bTBI), and study if these behavior patterns are altered following genetic deletion of the transcription factor Ets-like kinase 1 (Elk-1). Due to the role of Elk-1 in neuronal survival and proposed role in synaptic plasticity, we hypothesized that Elk-1 deletion would improve some neurobehavioral deficits, while impairing others, following blast exposure. In Elk-1 knockout (KO) animals, deficits in open field, spatial object recognition (SOR) and elevated zero maze performance after blast exposure disappeared, while new significant deficits appeared in spatial and associative memory. These are the first data suggesting a molecular mediator of anxiety deficits following bTBI, and represent the utility of the broad screening tool we developed. More broadly, we envision this open-source toolbox will provide a more consistent and rapid analysis of behavior across many neurological diseases, promoting the rapid discovery of novel pathways mediating disease progression and treatment.

Indexed as

automated behaviorBarnes mazeblast-induced traumatic brain injuryElk-1 knockoutsocial interactionspatial object recognition

Identifiers

PMID25339878
PMCPMC4189437
OpenAlexW2091632740

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.