Evidence map›Paper›PMID 25339443›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Mitochondrial COQ9 is a lipid-binding protein that associates with COQ7 to enable coenzyme Q biosynthesis.

Danielle C Lohman, Farhad Forouhar, Emily T Beebe, Matthew S Stefely, Catherine E Minogue, Arne Ulbrich, Jonathan A Stefely, Shravan Sukumar, Marta Luna-Sánchez, Adam Jochem and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 121 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Understanding coenzyme Q.Physiological reviews · 2024
    Review
  6. Observational
  7. Article
  8. Article
  9. Primary Coenzyme Q10 Deficiency: An Update.Antioxidants (Basel, Switzerland) · 2023
    Review
  10. Article
  11. Article
  12. Characterization ofMetabolites · 2023
    Article
  13. Coenzyme Q biochemistry and biosynthesis.Trends in biochemical sciences · 2023
    Review
  14. Neuroimaging in Primary Coenzyme-QAntioxidants (Basel, Switzerland) · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. Manganese-driven CoQ deficiency.Nature communications · 2022
    Article
  19. How plants synthesize coenzyme Q.Plant communications · 2022
    Review
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 2 countries.

Danielle C LohmanDepartments of Biochemistry.
Farhad ForouharDepartment of Biological Sciences, Northeast Structural Genomics Consortium, Columbia University, New York, NY 10027;
Emily T BeebeMitochondrial Protein Partnership, University of Wisconsin-Madison, Madison, WI 53706;
Matthew S StefelyDepartments of Biochemistry.
Catherine E MinogueChemistry.
Arne UlbrichChemistry.
Jonathan A StefelyDepartments of Biochemistry.
Shravan SukumarDepartments of Biochemistry.
Marta Luna-SánchezInstituto de Biotecnología, Centro de Investigación Biomédica, Parque Tecnológico de Ciencias de la Salud, Armilla, Granada, Spain; Departamento de Fisiología, Facultad de Medicina, Universidad de Granada, Granada, Spain;
Adam JochemDepartments of Biochemistry.
Scott LewDepartment of Biological Sciences, Northeast Structural Genomics Consortium, Columbia University, New York, NY 10027;
Jayaraman SeetharamanDepartment of Biological Sciences, Northeast Structural Genomics Consortium, Columbia University, New York, NY 10027;
Rong XiaoCenter for Advanced Biotechnology and Medicine and Department of Molecular Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854; and.
Huang WangCenter for Advanced Biotechnology and Medicine and Department of Molecular Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854; and.
Michael S WestphallGenome Center of Wisconsin, University of Wisconsin-Madison, Madison, WI 53706.
Russell L WrobelMitochondrial Protein Partnership, University of Wisconsin-Madison, Madison, WI 53706;
John K EverettCenter for Advanced Biotechnology and Medicine and Department of Molecular Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854; and.
Julie C MitchellDepartments of Biochemistry, Mathematics, and.
Luis C LópezInstituto de Biotecnología, Centro de Investigación Biomédica, Parque Tecnológico de Ciencias de la Salud, Armilla, Granada, Spain; Departamento de Fisiología, Facultad de Medicina, Universidad de Granada, Granada, Spain;
Joshua J CoonChemistry, Genome Center of Wisconsin, University of Wisconsin-Madison, Madison, WI 53706 Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53706;
Liang TongDepartment of Biological Sciences, Northeast Structural Genomics Consortium, Columbia University, New York, NY 10027; pagliarini@wisc.edu ltong@columbia.edu.
David J PagliariniDepartments of Biochemistry, Mitochondrial Protein Partnership, University of Wisconsin-Madison, Madison, WI 53706; pagliarini@wisc.edu ltong@columbia.edu.
Advanced Pharma · USColumbia University · USUniversity of Wisconsin–Madison · USDivision of Chemistry · USEnergy Center of Wisconsin · USNew York Structural Biology Center · USParque Tecnológico de la Salud · ESUniversidad de Granada · ES

Funding

University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI ROST, BURKHARD · 2010 to 2014
$36.9M
Research Training for Computation and Informatics in Biology and MedicineT15LM007359 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI Mark W. Craven, Colin Noel Dewey · 2002 to 2026
$22.6M
BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
Partnership for High-Throughput Enabled Biology of the Mitochondrial ProteomeU01GM094622 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 2010 to 2014
$7.8M
Dissection of COQ8 Signaling with Mass Spectrometry and Chemical GeneticsF30AG043282 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI STEFELY, JONATHAN ALLAN · 2012 to 2014
$116k
NIA NIH HHS F30 AG043282NIA NIH HHS F30AG043282NIGMS NIH HHS 5T32GM08349NIGMS NIH HHS T32 GM008349NIGMS NIH HHS T32 GM008692NIGMS NIH HHS U01 GM094622NIGMS NIH HHS U01GM094622NIGMS NIH HHS U54 GM094597NIGMS NIH HHS U54GM094597NLM NIH HHS T15 LM007359NLM NIH HHS T15LM007359
6 · The paper itself

Abstract

Coenzyme Q (CoQ) is an isoprenylated quinone that is essential for cellular respiration and is synthesized in mitochondria by the combined action of at least nine proteins (COQ1-9). Although most COQ proteins are known to catalyze modifications to CoQ precursors, the biochemical role of COQ9 remains unclear. Here, we report that a disease-related COQ9 mutation leads to extensive disruption of the CoQ protein biosynthetic complex in a mouse model, and that COQ9 specifically interacts with COQ7 through a series of conserved residues. Toward understanding how COQ9 can perform these functions, we solved the crystal structure of Homo sapiens COQ9 at 2.4 Å. Unexpectedly, our structure reveals that COQ9 has structural homology to the TFR family of bacterial transcriptional regulators, but that it adopts an atypical TFR dimer orientation and is not predicted to bind DNA. Our structure also reveals a lipid-binding site, and mass spectrometry-based analyses of purified COQ9 demonstrate that it associates with multiple lipid species, including CoQ itself. The conserved COQ9 residues necessary for its interaction with COQ7 comprise a surface patch around the lipid-binding site, suggesting that COQ9 might serve to present its bound lipid to COQ7. Collectively, our data define COQ9 as the first, to our knowledge, mammalian TFR structural homolog and suggest that its lipid-binding capacity and association with COQ7 are key features for enabling CoQ biosynthesis.

Indexed as

AnimalsCarrier ProteinsCrystallography, X-RayHumansLipid MetabolismMembrane ProteinsMiceMice, Mutant StrainsMitochondrial ProteinsMixed Function OxygenasesProtein Structure, TertiaryUbiquinoneCarrier ProteinsCoq7 protein, mouseMembrane ProteinsMitochondrial ProteinsMixed Function OxygenasesUbiquinonecoenzyme QCOQ7COQ9TFR familyubiquinone

Identifiers

PMID25339443
PMCPMC4226113
OpenAlexW2039340367

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.