Evidence map›Paper›PMID 25339407›Full record

ArticlePlant physiology2014

Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.

Léonie Suter, Marlene Rüegg, Niklaus Zemp, Lars Hennig, Alex Widmer

Abstract read
In one paragraph

Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
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  7. Class III Peroxidases in Response to Multiple Abiotic Stresses inInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. Beyond the Genetic Pathways, Flowering Regulation Complexity inInternational journal of molecular sciences · 2021
    Review
  10. Cloning and expression ofJournal of genetics · 2021
    Article
  11. Article
  12. Possible Role ofFrontiers in plant science · 2017
    Article
  13. Review
  14. Predicting the evolutionary dynamics of seasonal adaptation to novel climates in Arabidopsis thaliana.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Léonie SuterEidgenössisch Technische Hochschule Zürich, Institute of Integrative Biology, 8092 Zurich, Switzerland (L.S., M.R., N.Z., A.W.); andDepartment of Plant Biology, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, SE-75007 Uppsala, Sweden (L.H.).
Marlene RüeggEidgenössisch Technische Hochschule Zürich, Institute of Integrative Biology, 8092 Zurich, Switzerland (L.S., M.R., N.Z., A.W.); andDepartment of Plant Biology, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, SE-75007 Uppsala, Sweden (L.H.).
Niklaus ZempEidgenössisch Technische Hochschule Zürich, Institute of Integrative Biology, 8092 Zurich, Switzerland (L.S., M.R., N.Z., A.W.); andDepartment of Plant Biology, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, SE-75007 Uppsala, Sweden (L.H.).
Lars HennigEidgenössisch Technische Hochschule Zürich, Institute of Integrative Biology, 8092 Zurich, Switzerland (L.S., M.R., N.Z., A.W.); andDepartment of Plant Biology, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, SE-75007 Uppsala, Sweden (L.H.).ORCID http://orcid.org/0000-0002-6645-1862
Alex WidmerEidgenössisch Technische Hochschule Zürich, Institute of Integrative Biology, 8092 Zurich, Switzerland (L.S., M.R., N.Z., A.W.); andDepartment of Plant Biology, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, SE-75007 Uppsala, Sweden (L.H.) alex.widmer@env.ethz.ch.ORCID http://orcid.org/0000-0001-8253-5137

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Steep environmental gradients provide ideal settings for studies of potentially adaptive phenotypic and genetic variation in plants. The accurate timing of flowering is crucial for reproductive success and is regulated by several pathways, including the vernalization pathway. Among the numerous genes known to enable flowering in response to vernalization, the most prominent is FLOWERING LOCUS C (FLC). FLC and other genes of the vernalization pathway vary extensively among natural populations and are thus candidates for the adaptation of flowering time to environmental gradients such as altitude. We used 15 natural Arabidopsis (Arabidopsis thaliana) genotypes originating from an altitudinal gradient (800-2,700 m above sea level) in the Swiss Alps to test whether flowering time correlated with altitude under different vernalization scenarios. Additionally, we measured the expression of 12 genes of the vernalization pathway and its downstream targets. Flowering time correlated with altitude in a nonlinear manner for vernalized plants. Flowering time could be explained by the expression and regulation of the vernalization pathway, most notably by AGAMOUS LIKE19 (AGL19), FLOWERING LOCUS T (FT), and FLC. The expression of AGL19, FT, and VERNALIZATION INSENSITIVE3 was associated with altitude, and the regulation of MADS AFFECTING FLOWERING2 (MAF2) and MAF3 differed between low- and high-altitude genotypes. In conclusion, we found clinal variation across an altitudinal gradient both in flowering time and the expression and regulation of genes in the flowering time control network, often independent of FLC, suggesting that the timing of flowering may contribute to altitudinal adaptation.

Indexed as

AcclimatizationGene Expression Regulation, PlantGenetic VariationAltitudeArabidopsisArabidopsis ProteinsEnvironmentFlowersGenes, RegulatorGenotypePhenotypeReproductionTime FactorsArabidopsis Proteins

Identifiers

PMID25339407
PMCPMC4256870

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.