ArticleJournal of clinical microbiology2015
Use of whole-genus genome sequence data to develop a multilocus sequence typing tool that accurately identifies Yersinia isolates to the species and subspecies levels.
Article in Journal of clinical microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Article
- Repression of theJournal of veterinary research · 2025Article
- A case-control study and molecular epidemiology of yersiniosis in Aotearoa New Zealand.Journal of clinical microbiology · 2024Article
- Hunted Wild Boars in Sardinia: Prevalence, Antimicrobial Resistance and Genomic Analysis ofFoods (Basel, Switzerland) · 2023Article
- Public health implications of Yersinia enterocolitica investigation: an ecological modeling and molecular epidemiology study.Infectious diseases of poverty · 2023Article
- Phylogenetic trees of closely related bacterial species and subspecies based on frequencies of short nucleotide sequences.PloS one · 2023Article
- Case report: a genomics-guided reclassification of a blood culture isolate misassigned by MALDI-TOF asAccess microbiology · 2022Article
- Whole-genome sequencing-based prediction and analysis of antimicrobial resistance inFrontiers in microbiology · 2022Article
- Virulence Determinants and Genetic Diversity ofPathogens (Basel, Switzerland) · 2021Article
- Yersinia pseudotuberculosis serotype O:1 infection in a captive Seba's short tailed-fruit bat (Carollia perspicillata) colony in Switzerland.BMC veterinary research · 2021Article
- Yersiniosis in New Zealand.Pathogens (Basel, Switzerland) · 2021Review
- Diversification of OmpA and OmpF of Yersinia ruckeri is independent of the underlying species phylogeny and evidence of virulence-related selection.Scientific reports · 2021Article
- Comparative genomic insights intoMicrobial genomics · 2020Article
- Article
- The EnteroBase user's guide, with case studies onGenome research · 2020Article
- Genus-wideMicrobial genomics · 2019Article
- Evaluating sub-typing methods for pathogenic Yersinia enterocolitica to support outbreak investigations in New Zealand.Epidemiology and infection · 2019Article
- Prevalence and genomic characteristics of zoonotic gastro-intestinal pathogens and ESBL/pAmpC producingInfection ecology & epidemiology · 2019Article
- 'Add, stir and reduce': Yersinia spp. as model bacteria for pathogen evolution.Nature reviews. Microbiology · 2016Review
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Authors and funding
13 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The genus Yersinia is a large and diverse bacterial genus consisting of human-pathogenic species, a fish-pathogenic species, and a large number of environmental species. Recently, the phylogenetic and population structure of the entire genus was elucidated through the genome sequence data of 241 strains encompassing every known species in the genus. Here we report the mining of this enormous data set to create a multilocus sequence typing-based scheme that can identify Yersinia strains to the species level to a level of resolution equal to that for whole-genome sequencing. Our assay is designed to be able to accurately subtype the important human-pathogenic species Yersinia enterocolitica to whole-genome resolution levels. We also report the validation of the scheme on 386 strains from reference laboratory collections across Europe. We propose that the scheme is an important molecular typing system to allow accurate and reproducible identification of Yersinia isolates to the species level, a process often inconsistent in nonspecialist laboratories. Additionally, our assay is the most phylogenetically informative typing scheme available for Y. enterocolitica.
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