Evidence map›Paper›PMID 25339178›Full record

ArticleThe Journal of biological chemistry2014

The Ssu72 phosphatase mediates the RNA polymerase II initiation-elongation transition.

Jesús D Rosado-Lugo, Michael Hampsey

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Ssu72 Dual-Specific Protein Phosphatase: From Gene to Diseases.International journal of molecular sciences · 2021
    Review
  5. Review
  6. Review
  7. Article
  8. Review
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  11. Article
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  13. Review
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  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jesús D Rosado-LugoFrom the Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, New Jersey 08854.
Michael HampseyFrom the Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers University, Piscataway, New Jersey 08854 michael.hampsey@rutgers.edu.

Funding

UMDNJ-RUTGERS UNIVERSITY PIPELINE PROGRAMR25GM055145 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI HAIMOVICH, BEATRICE, LANGER, JEROME ALAN · 1996 to 2020
$8.7M
The coupling of mRNA transcription and 3' end formationR01GM068887 · NIGMS · TUFTS UNIVERSITY BOSTON · PI MOORE, CLAIRE L · 2003 to 2010
$4.5M
Inter-University Doctoral Degree:Puerto Rico to RutgersR25GM058389 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI LANGER, JEROME ALAN, RIOS-VELAZQUEZ, CARLOS · 1998 to 2016
$3.0M
GENETIC ANALYSIS OF TRANSCRIPTION INITIATION IN YEASTR01GM039484 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI HAMPSEY, MICHAEL · 1995 to 2012
$2.7M
NIGMS NIH HHS GM55145NIGMS NIH HHS GM58389NIGMS NIH HHS R01 GM039484NIGMS NIH HHS R01 GM068887NIGMS NIH HHS R01 GM39484
6 · The paper itself

Abstract

Transitions between the different stages of the RNAPII transcription cycle involve the recruitment and exchange of factors, including mRNA capping enzymes, elongation factors, splicing factors, 3'-end-processing complexes, and termination factors. These transitions are coordinated by the dynamic phosphorylation of the C-terminal domain (CTD) of the largest subunit of RNAPII (Rpb1). The CTD is composed of reiterated heptapeptide repeats (Y(1)S(2)P(3)T(4)S(5)P(6)S(7)) that undergo phosphorylation and dephosphorylation as RNAPII transitions through the transcription cycle. An essential phosphatase in this process is Ssu72, which exhibits catalytic specificity for Ser(P)(5) and Ser(P)(7). Ssu72 is unique in that it is specific for Ser(P)(5) in one orientation of the CTD and for Ser(P)(7) when bound in the opposite orientation. Moreover, Ssu72 interacts with components of the initiation machinery and affects start site selection yet is an integral component of the CPF 3'-end-processing complex. Here we provide a comprehensive view of the effects of Ssu72 with respect to its Ser(P)(5) phosphatase activity. We demonstrate that Ssu72 dephosphorylates Ser(P)(5) at the initiation-elongation transition. Furthermore, Ssu72 indirectly affects the levels of Ser(P)(2) during the elongation stage of transcription but does so independent of its catalytic activity.

Indexed as

Gene Expression Regulation, FungalChromatin ImmunoprecipitationmRNA Cleavage and Polyadenylation FactorsPhosphoprotein PhosphatasesPhosphorylationRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSerineSignal TransductionTranscription Elongation, GeneticTranscription Initiation, GeneticmRNA Cleavage and Polyadenylation FactorsPhosphoprotein PhosphatasesRNA Polymerase IISaccharomyces cerevisiae ProteinsSerineSSU72 protein, S cerevisiaePhosphataseRNA Polymerase IITranscriptionTranscription Initiation FactorTranscription RegulationTranscription Termination

Identifiers

PMID25339178
PMCPMC4256330

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.