Evidence map›Paper›PMID 25338704›Full record

ArticleVeterinary research2014

A B-cell targeting virus disrupts potentially protective genomic methylation patterns in lymphoid tissue by increasing global 5-hydroxymethylcytosine levels.

Nick A Ciccone, William Mwangi, Alexey Ruzov, Lorraine P Smith, Colin Butter, Venugopal Nair

Open access · goldAbstract read
In one paragraph

Article in Veterinary research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Nick A CicconeAvian Viral Diseases (AVD), Compton Laboratory, The Pirbright Institute, Compton, Berkshire, RG20 7NN, UK. nick.ciccone@pirbright.ac.uk.
William MwangiAvian Viral Diseases (AVD), Compton Laboratory, The Pirbright Institute, Compton, Berkshire, RG20 7NN, UK. william.mwangi@pirbright.ac.uk.
Alexey RuzovWolfson Centre for Stem Cells, Tissue Engineering and Modelling (STEM), Division of Cancer and Stem Cells, School of Medicine, Centre for Biomolecular Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, UK. alexey.ruzov@nottingham.ac.uk.
Lorraine P SmithAvian Viral Diseases (AVD), Compton Laboratory, The Pirbright Institute, Compton, Berkshire, RG20 7NN, UK. lorraine-p.smith@pirbright.ac.uk.
Colin ButterAvian Viral Diseases (AVD), Compton Laboratory, The Pirbright Institute, Compton, Berkshire, RG20 7NN, UK. colin.butter@pirbright.ac.uk.
Venugopal NairAvian Viral Diseases (AVD), Compton Laboratory, The Pirbright Institute, Compton, Berkshire, RG20 7NN, UK. venugopal.nair@pirbright.ac.uk.
The Pirbright Institute · GBUniversity of Nottingham · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/I/00001423
6 · The paper itself

Abstract

The mechanisms by which viruses modulate the immune system include changes in host genomic methylation. 5-hydroxymethylcytosine (5hmC) is the catalytic product of the Tet (Ten-11 translocation) family of enzymes and may serve as an intermediate of DNA demethylation. Recent reports suggest that 5hmC may confer consequences on cellular events including the pathogenesis of disease; in order to explore this possibility further we investigated both 5-methylcytosine (5mC) and 5hmC levels in healthy and diseased chicken bursas of Fabricius. We discovered that embryonic B-cells have high 5mC content while 5hmC decreases during bursa development. We propose that a high 5mC level protects from the mutagenic activity of the B-cell antibody diversifying enzyme activation induced deaminase (AID). In support of this view, AID mRNA increases significantly within the developing bursa from embryonic to post hatch stages while mRNAs that encode Tet family members 1 and 2 reduce over the same period. Moreover, our data revealed that infectious bursal disease virus (IBDV) disrupts this genomic methylation pattern causing a global increase in 5hmC levels in a mechanism that may involve increased Tet 1 and 2 mRNAs. To our knowledge this is the first time that a viral infection has been observed to cause global increases in genomic 5hmC within infected host tissues, underlining a mechanism that may involve the induction of B-cell genomic instability and cell death to facilitate viral egress.

Indexed as

ChickensDNA MethylationGenome5-MethylcytosineAnimalsBirnaviridae InfectionsB-LymphocytesBursa of FabriciusCytosineInfectious bursal disease virusPoultry Diseases5-hydroxymethylcytosine5-MethylcytosineCytosine

Identifiers

PMID25338704
PMCPMC4258027
OpenAlexW2108285219

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.