Evidence map›Paper›PMID 25337902›Full record

ArticlePloS one2014

Single nucleotide polymorphisms of one-carbon metabolism and cancers of the esophagus, stomach, and liver in a Chinese population.

Shen-Chih Chang, Po-Yin Chang, Brendan Butler, Binh Y Goldstein, Lina Mu, Lin Cai, Nai-Chieh Y You, Aileen Baecker, Shun-Zhang Yu, David Heber and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 9 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 9 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 9 syntheses or guidelines pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Pooled it
  7. A Meta-Analysis of the Association betweenBioMed research international · 2017
    Pooled it
  8. Pooled it
  9. Pooled it
  10. Review
  11. Medicina (Kaunas, Lithuania) · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Association ofJournal of Cancer · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Shen-Chih ChangDepartment of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America.
Po-Yin ChangDepartment of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America.
Brendan ButlerDepartment of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America.
Binh Y GoldsteinDepartment of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America.
Lina MuDepartment of Social and Preventive Medicine, State University of New York at Buffalo, Buffalo, NY, United States of America.
Lin CaiDepartment of Epidemiology, Fujian Medical University, Fuzhou, Fujian, China.
Nai-Chieh Y YouDepartment of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America.
Aileen BaeckerDepartment of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America.
Shun-Zhang YuDepartment of Epidemiology, Fudan University School of Public Health, Shanghai, China.
David HeberCenter for Human Nutrition, University of California Los Angeles David Geffen School of Medicine, Los Angeles, CA, United States of America.
Qing-Yi LuCenter for Human Nutrition, University of California Los Angeles David Geffen School of Medicine, Los Angeles, CA, United States of America.
Liming LiDepartment of Epidemiology, Peking University School of Public Health, Beijing, China.
Sander GreenlandDepartment of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America; Department of Statistics, University of California Los Angeles College of Letters and Science, Los Angeles, CA, United States of America.
Zuo-Feng ZhangDepartment of Epidemiology, University of California Los Angeles Fielding School of Public Health, Los Angeles, CA, United States of America.
University of California, Los Angeles · USFudan University · CNFujian Medical University · CNPeking University · CNUniversity at Buffalo, State University of New York · US

Funding

UCLA CANCER EPIDEMIOLOGY TRAINING PROGRAMT32CA009142 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHANG, ZUO-FENG · 1986 to 2024
$6.3M
Molecular Epidemiology and Gene-Environment InteractionR21ES011667 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHANG, ZUO-FENG · 2002 to 2004
$651k
MOLECULAR EPIDEMIOLOGY OF BLADDER CANCERR01ES006718 · NIEHS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI ZHANG, ZUO-FENG · 1993 to 1995
–
NCI NIH HHS CA09142NCI NIH HHS T32 CA009142NIEHS NIH HHS ES 011667NIEHS NIH HHS ES06718NIEHS NIH HHS R21 ES011667
6 · The paper itself

Abstract

One-carbon metabolism (folate metabolism) is considered important in carcinogenesis because of its involvement in DNA synthesis and biological methylation reactions. We investigated the associations of single nucleotide polymorphisms (SNPs) in folate metabolic pathway and the risk of three GI cancers in a population-based case-control study in Taixing City, China, with 218 esophageal cancer cases, 206 stomach cancer cases, 204 liver cancer cases, and 415 healthy population controls. Study participants were interviewed with a standardized questionnaire, and blood samples were collected after the interviews. We genotyped SNPs of the MTHFR, MTR, MTRR, DNMT1, and ALDH2 genes, using PCR-RFLP, SNPlex, or TaqMan assays. To account for multiple comparisons and reduce the chances of false reports, we employed semi-Bayes (SB) shrinkage analysis. After shrinkage and adjusting for potential confounding factors, we found positive associations between MTHFR rs1801133 and stomach cancer (any T versus C/C, SB odds-ratio [SBOR]: 1.79, 95% posterior limits: 1.18, 2.71) and liver cancer (SBOR: 1.51, 95% posterior limits: 0.98, 2.32). There was an inverse association between DNMT1 rs2228612 and esophageal cancer (any G versus A/A, SBOR: 0.60, 95% posterior limits: 0.39, 0.94). In addition, we detected potential heterogeneity across alcohol drinking status for ORs relating MTRR rs1801394 to esophageal (posterior homogeneity P = 0.005) and stomach cancer (posterior homogeneity P = 0.004), and ORs relating MTR rs1805087 to liver cancer (posterior homogeneity P = 0.021). Among non-alcohol drinkers, the variant allele (allele G) of these two SNPs was inversely associated with the risk of these cancers; while a positive association was observed among ever-alcohol drinkers. Our results suggest that genetic polymorphisms related to one-carbon metabolism may be associated with cancers of the esophagus, stomach, and liver. Heterogeneity across alcohol consumption status of the associations between MTR/MTRR polymorphisms and these cancers indicates potential interactions between alcohol drinking and one-carbon metabolic pathway.

Indexed as

AgedAsian PeopleCase-Control StudiesChinaEsophageal NeoplasmsFemaleFerredoxin-NADP ReductaseGenetic Association StudiesGenetic Predisposition to DiseaseHumansLiver NeoplasmsMaleMiddle AgedNeoplasm ProteinsPolymorphism, Single NucleotideStomach NeoplasmsFerredoxin-NADP Reductasemethionine synthase reductaseNeoplasm Proteins

Identifiers

PMID25337902
PMCPMC4206280
OpenAlexW2012696777

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.