Evidence map›Paper›PMID 25336684›Full record

ArticleJournal of experimental botany2015

Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles.

Tomonobu Toyomasu, Masami Usui, Chizu Sugawara, Yuri Kanno, Arisa Sakai, Hirokazu Takahashi, Mikio Nakazono, Masaharu Kuroda, Koji Miyamoto, Yu Morimoto and 4 more

Open access · greenAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 37 citations in OpenAlex.

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  5. Full-length transcriptome profiling ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
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  13. The foxtail millet (Setaria italica) terpene synthase gene family.The Plant journal : for cell and molecular biology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Tomonobu ToyomasuDepartment of Bioresource Engineering, Yamagata University, Yamagata 997-8555, Japan toyomasu@tds1.tr.yamagata-u.ac.jp.
Masami UsuiDepartment of Bioresource Engineering, Yamagata University, Yamagata 997-8555, Japan.
Chizu SugawaraDepartment of Bioresource Engineering, Yamagata University, Yamagata 997-8555, Japan.
Yuri KannoDepartment of Bioresource Engineering, Yamagata University, Yamagata 997-8555, Japan.
Arisa SakaiDepartment of Bioresource Engineering, Yamagata University, Yamagata 997-8555, Japan.
Hirokazu TakahashiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Mikio NakazonoGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Masaharu KurodaRice Physiological Research Team, NARO Agricultural Research Center, Niigata 943-0193, Japan.
Koji MiyamotoBiotechnology Research Center, The University of Tokyo, Tokyo 113-8657, Japan.
Yu MorimotoLaboratory of Bioactive Molecules, Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan.
Wataru MitsuhashiDepartment of Bioresource Engineering, Yamagata University, Yamagata 997-8555, Japan.
Kazunori OkadaBiotechnology Research Center, The University of Tokyo, Tokyo 113-8657, Japan.
Shinjiro YamaguchiLaboratory of Bioactive Molecules, Graduate School of Life Sciences, Tohoku University, Sendai 980-8577, Japan.
Hisakazu YamaneBiotechnology Research Center, The University of Tokyo, Tokyo 113-8657, Japan.
Yamagata University · JPThe University of Tokyo · JPNagoya University · JPTohoku University · JPNiigata Agricultural Research Institute · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gibberellins (GAs) are diterpenoid phytohormones that regulate various aspects of plant growth. Tetracyclic hydrocarbon ent-kaurene is a biosynthetic intermediate of GAs, and is converted from geranylgeranyl diphosphate, a common precursor of diterpenoids, via ent-copalyl diphosphate (ent-CDP) through successive cyclization reactions catalysed by two distinct diterpene synthases, ent-CDP synthase and ent-kaurene synthase. Rice (Oryza sativa L.) has two ent-CDP synthase genes, OsCPS1 and OsCPS2. It has been thought that OsCPS1 participates in GA biosynthesis, while OsCPS2 participates in the biosynthesis of phytoalexins, phytocassanes A-E, and oryzalexins A-F. It has been shown previously that loss-of-function OsCPS1 mutants display a severe dwarf phenotype caused by GA deficiency despite possessing another ent-CDP synthase gene, OsCPS2. Here, experiments were performed to account for the non-redundant biological function of OsCPS1 and OsCPS2. Quantitative reverse transcription-PCR (qRT-PCR) analysis showed that OsCPS2 transcript levels were drastically lower than those of OsCPS1 in the basal parts, including the meristem of the second-leaf sheaths of rice seedlings. qRT-PCR results using tissue samples prepared by laser microdissection suggested that OsCPS1 transcripts mainly localized in vascular bundle tissues, similar to Arabidopsis CPS, which is responsible for GA biosynthesis, whereas OsCPS2 transcripts mainly localized in epidermal cells that address environmental stressors such as pathogen attack. Furthermore, the OsCPS2 transgene under regulation of the OsCPS1 promoter complemented the dwarf phenotype of an OsCPS1 mutant, oscps1-1. The results indicate that transcripts of the two ent-CDP synthase genes differentially localize in rice plants according to their distinct biological roles, OsCPS1 for growth and OsCPS2 for defence.

Indexed as

Alkyl and Aryl TransferasesAmino Acid SequenceMolecular Sequence DataOryzaPlant ProteinsTissue DistributionAlkyl and Aryl Transferasesent-kaurene synthetase Aent-kaurene synthetase BPlant ProteinsBiosynthetic enzymediterpenegene expressiongibberellingrowthrice.

Identifiers

PMID25336684
PMCPMC4265168
OpenAlexW2134928750

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.