Evidence map›Paper›PMID 25335912›Full record

ReviewJournal of cellular physiology2015

Vitamin D receptor and RXR in the post-genomic era.

Mark D Long, Lara E Sucheston-Campbell, Moray J Campbell

Open access · greenAbstract readReview
In one paragraph

Review in Journal of cellular physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Vitamin D Receptor (Nutrients · 2022
    Pooled it
  2. Trial
  3. Vitamins DFrontiers in immunology · 2022
    Trial
  4. Review
  5. Article
  6. Article
  7. Review
  8. Targeting Nrf2 signaling in dry eye.International journal of ophthalmology · 2024
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mark D LongDepartment of Pharmacology and Therapeutics, Roswell Park Cancer Institute, Buffalo, New York.
Lara E Sucheston-Campbell
Moray J Campbell
Roswell Park Comprehensive Cancer Center · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI Dean G. Tang · 1985 to 2026
$116.6M
ANTITUMOR MECHANISMS &THERAPEUTIC EFFECTS OF VITAMIN DR01CA067267 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JOHNSON, CANDACE S, TRUMP, DONALD L · 1995 to 2013
$5.7M
Vitamin D in Prostate Cancer: Tumor Vasculature EffectsR01CA095045 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI JOHNSON, CANDACE S · 2002 to 2012
$3.2M
Vitamin D Analogs for Chemoprevention of Prostate CAncerR01CA095367 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI FOSTER, BARBARA A. · 2002 to 2012
$3.2M
DRUG DEVELOPMENT AND CANCER TREATMENTST32CA009072 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI JOHNSON, CANDACE S · 1985 to 2014
$2.3M
NCI NIH HHS 2R01-CA-095045-06NCI NIH HHS CA016056NCI NIH HHS P30 CA016056NCI NIH HHS R01 CA067267NCI NIH HHS R01 CA095045NCI NIH HHS R01 CA095367NCI NIH HHS R01 CA095367-06NCI NIH HHS T32 CA009072NCI NIH HHS T32CA009072
6 · The paper itself

Abstract

Following the elucidation of the human genome and components of the epigenome, it is timely to revisit what is known of vitamin D receptor (VDR) function. Early transcriptomic studies using microarray approaches focused on the protein coding mRNA that were regulated by the VDR, usually following treatment with ligand. These studies quickly established the approximate size and surprising diversity of the VDR transcriptome, revealing it to be highly heterogenous and cell type and time dependent. Investigators also considered VDR regulation of non-protein coding RNA and again, cell and time dependency was observed. Attempts to integrate mRNA and miRNA regulation patterns are beginning to reveal patterns of co-regulation and interaction that allow for greater control of mRNA expression, and the capacity to govern more complex cellular events. Alternative splicing in the trasncriptome has emerged as a critical process in transcriptional control and there is evidence of the VDR interacting with components of the splicesome. ChIP-Seq approaches have proved to be pivotal to reveal the diversity of the VDR binding choices across cell types and following treatment, and have revealed that the majority of these are non-canonical in nature. The underlying causes driving the diversity of VDR binding choices remain enigmatic. Finally, genetic variation has emerged as important to impact the transcription factor affinity towards genomic binding sites, and recently the impact of this on VDR function has begun to be considered.

Indexed as

AnimalsGene Expression RegulationGenomicsHumansReceptors, CalcitriolRetinoid X ReceptorsTranscription FactorsVitamin DReceptors, CalcitriolRetinoid X ReceptorsTranscription FactorsVitamin D

Identifiers

PMID25335912
PMCPMC4574486
OpenAlexW1918216498

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.