Evidence map›Paper›PMID 25333615›Full record

ArticleAIDS research and human retroviruses2015

Persistent production of an integrase-deleted HIV-1 variant with no resistance mutation and wild-type proviral DNA in a treated patient.

Mary-Anne Trabaud, Laurent Cotte, Julien Saison, Christophe Ramière, Corinne Ronfort, Fabienne Venet, Jean-Claude Tardy, Guillaume Monneret, Patrice André

Open access · greenAbstract read
In one paragraph

Article in AIDS research and human retroviruses, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Korean Red Ginseng increases defectiveJournal of ginseng research · 2019
    Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Mary-Anne Trabaud1 Laboratoire de Virologie, Hôpital de la Croix Rousse, Hospices Civils de Lyon , Lyon, France .
Laurent Cotte
Julien Saison
Christophe Ramière
Corinne Ronfort
Fabienne Venet
Jean-Claude Tardy
Guillaume Monneret
Patrice André
Hospices Civils de Lyon · FRHôpital Edouard Herriot · FRInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An HIV-infected patient presenting an unexpected viral escape under combined antiretroviral treatment is described. The virus isolated from plasma contained a large deletion in the HIV-1 integrase gene but no known resistance mutation. Nested polymerase chain reactions (PCRs) with patient virus integrase-specific primers and probes were developed and used to detect the mutant from plasma, blood, rectal biopsies, and sperm. The variant progressively emerged during a period of therapy-induced virosuppression, and persisted at a low but detectable level for at least 5 years. Surprisingly, proviral DNA from lymphocytes, rectal cells, and sperm cells was, and remained, mainly wild type. Cellular HIV RNA with the deletion was detected only once from the rectum. The origin and mechanisms underlying this so far not described production at a detectable level are largely hypothetical. This observation raised concern about the ability of defective viruses to spread.

Indexed as

Anti-HIV AgentsBase SequenceDefective VirusesDNA, ViralDrug Therapy, CombinationHIV-1HIV InfectionsHumansImmune EvasionIntegrasesLamivudineLeukocytes, MononuclearLopinavirMolecular Sequence DataProvirusesSequence Analysis, DNAAnti-HIV AgentsDNA, ViralIntegrasesLamivudineLopinavirZidovudine

Identifiers

PMID25333615
PMCPMC4287311
OpenAlexW2314640522

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.