Evidence map›Paper›PMID 25332064›Full record

ArticleArthritis research & therapy2014

An Immunochip-based interrogation of scleroderma susceptibility variants identifies a novel association at DNASE1L3.

Jane Zochling, Felicity Newell, Jac C Charlesworth, Paul Leo, Jim Stankovich, Adrian Cortes, Yuan Zhou, Wendy Stevens, Joanne Sahhar, Janet Roddy and 6 more

Open access · goldAbstract read
In one paragraph

Article in Arthritis research & therapy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 5 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 5 syntheses or guidelines pooled it, 61 citations in OpenAlex.

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  16. Systemic lupus erythematosus as a genetic disease.Clinical immunology (Orlando, Fla.) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 1 country.

Jane Zochling
Felicity Newell
Jac C Charlesworth
Paul Leo
Jim Stankovich
Adrian Cortes
Yuan Zhou
Wendy Stevens
Joanne Sahhar
Janet Roddy
Peter Nash
Kathleen Tymms
Maureen Rischmueller
Sue Lester
Susanna Proudman
Matthew A Brown
University of Tasmania · AUTranslational Research Institute · AUQueen Elizabeth Hospital · AUMonash Medical Centre · AURoyal Adelaide Hospital · AURoyal Perth Hospital · AUSt Vincent's Hospital Melbourne · AUThe University of Queensland · AU

Funding

Wellcome Trust
6 · The paper itself

Abstract

introductionThe aim of the study was to interrogate the genetic architecture and autoimmune pleiotropy of scleroderma susceptibility in the Australian population.

methodsWe genotyped individuals from a well-characterized cohort of Australian scleroderma patients with the Immunochip, a custom array enriched for single nucleotide polymorphisms (SNPs) at immune loci. Controls were taken from the 1958 British Birth Cohort. After data cleaning and adjusting for population stratification the final dataset consisted of 486 cases, 4,458 controls and 146,525 SNPs. Association analyses were conducted using logistic regression in PLINK. A replication study was performed using 833 cases and 1,938 controls.

resultsA total of eight loci with suggestive association (P <10-4.5) were identified, of which five showed significant association in the replication cohort (HLA-DRB1, DNASE1L3, STAT4, TNP03-IRF5 and VCAM1). The most notable findings were at the DNASE1L3 locus, previously associated with systemic lupus erythematosus, and VCAM1, a locus not previously associated with human disease. This study identified a likely functional variant influencing scleroderma susceptibility at the DNASE1L3 locus; a missense polymorphism rs35677470 in DNASE1L3, with an odds ratio of 2.35 (P = 2.3 × 10(-10)) in anti-centromere antibody (ACA) positive cases.

conclusionsThis pilot study has confirmed previously reported scleroderma associations, revealed further genetic overlap between scleroderma and systemic lupus erythematosus, and identified a putative novel scleroderma susceptibility locus.

Indexed as

Polymorphism, Single NucleotideAutoantibodiesCentromereCohort StudiesEndodeoxyribonucleasesFemaleGene FrequencyGenetic PleiotropyGenetic Predisposition to DiseaseGenotypeHumansLinkage DisequilibriumLogistic ModelsMaleMiddle AgedOdds RatioAutoantibodiesDNASE1L3 protein, humanEndodeoxyribonucleases

Identifiers

PMID25332064
PMCPMC4230517
OpenAlexW2159996928

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.