Evidence map›Paper›PMID 25331524›Full record

ArticleHepatology (Baltimore, Md.)2015

Systems biological analyses reveal the hepatitis C virus (HCV)-specific regulation of hematopoietic development.

Victoria M Velazquez, Luke S Uebelhoer, Manoj Thapa, Chris C Ibegbu, Cynthia Courtney, Steven E Bosinger, Joseph F Magliocca, Andrew B Adams, Allan D Kirk, Stuart J Knechtle and 3 more

Open access · greenAbstract read
In one paragraph

Article in Hepatology (Baltimore, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. CD4Hepatology (Baltimore, Md.) · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Victoria M VelazquezEmory Vaccine Center, Emory University School of Medicine, Atlanta, GA.
Luke S Uebelhoer
Manoj Thapa
Chris C Ibegbu
Cynthia Courtney
Steven E Bosinger
Joseph F Magliocca
Andrew B Adams
Allan D Kirk
Stuart J Knechtle
Daniel Kalman
Mehul S Suthar
Arash Grakoui
Emory University · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
YNPRC NHP CLINICAL MEDICINE RESIDENCY PROGRAM - SUPPLEMENTP51RR000165 · NCRR · EMORY UNIVERSITY · PI ALTMAN, JOHN DAVID · 1985 to 2011
$114.0M
Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Carlos del Rio · 2002 to 2026
$74.0M
Mechanisms of hepatitis C virus persistenceR01AI070101 · NIAID · EMORY UNIVERSITY · PI GRAKOUI, ARASH · 2006 to 2016
$3.9M
Advanced Research Training in Transplantation ScienceT32AI070081 · NIAID · EMORY UNIVERSITY · PI Mandy L Ford · 2006 to 2026
$3.1M
Defining the intrahepatic immune response to hepatitis C virusR01DK083356 · NIDDK · EMORY UNIVERSITY · PI GRAKOUI, ARASH · 2010 to 2013
$1.5M
Mechanisms of hepatitis C virus persistenceR56AI070101 · NIAID · EMORY UNIVERSITY · PI GRAKOUI, ARASH · 2011 to 2011
$437k
Role of Inflammatory B cells in Liver Fibrosis and Chronic HCV InfectionF32DK101163 · NIDDK · EMORY UNIVERSITY · PI THAPA, MANOJ · 2014 to 2015
$113k
NCRR NIH HHS P51 RR000165NCRR NIH HHS RR-00165NIAID NIH HHS AI070101NIAID NIH HHS P30 AI050409NIAID NIH HHS R01 AI070101NIAID NIH HHS R56 AI070101NIAID NIH HHS T32 AI070081NIAID NIH HHS T32AI70081-06AINIDDK NIH HHS DK083356NIDDK NIH HHS F32 DK101163NIDDK NIH HHS F32DK101163-01NIDDK NIH HHS R01 DK083356NIH HHS P51 OD011132
6 · The paper itself

Abstract

unlabelledChronic liver disease is characterized by the liver enrichment of myeloid dendritic cells (DCs). To assess the role of disease on myelopoiesis, we utilized a systems biology approach to study development in liver-resident cells expressing stem cell marker CD34. In patients with endstage liver disease, liver CD34+ cells were comprised of two subsets, designated CD34+CD146+ and CD34+CD146-, and hematopoietic function was restricted to CD34+CD146- cells. Liver CD34 frequencies were reduced during nonalcoholic steatohepatitis (NASH) and chronic hepatitis C virus (HCV) compared to alcohol liver disease (ALD), and this reduction correlated with viral load in the HCV cohort. To better understand the relationship between liver CD34+CD146+ and CD34+CD146- subsets and any effects of disease on CD34 development, we used gene expression profiling and computational modeling to compare each subset during ALD and HCV. For CD34+CD146+ cells, increased expression of endothelial cell genes including von Willebrand factor, VE-cadherin, and eNOS were observed when compared to CD34+CD146- cells, and minimal effects of ALD and HCV diseases on gene expression were observed. Importantly for CD34+CD146- cells, chronic HCV was associated with a distinct "imprint" of programs related to cell cycle, DNA repair, chemotaxis, development, and activation, with an emphasis on myeloid and B lymphocyte lineages. This HCV signature was further translated in side-by-side analyses, where HCV CD34+CD146- cells demonstrated superior hematopoietic growth, colony formation, and diversification compared to ALD and NASH when cultured identically. Disease-associated effects on hematopoiesis were also evident by phenotypic alterations in the expression of CD14, HLA-DR, and CD16 by myeloid progeny cells.

conclusionEtiology drives progenitor fate within diseased tissues. The liver may be a useful source of hematopoietic cells for therapy, or as therapeutic targets.

Indexed as

Systems BiologyAntigens, CD34CD146 AntigenCell LineageHematopoiesisHematopoietic Stem CellsHepacivirusHepatitis C, ChronicHumansLiverNon-alcoholic Fatty Liver DiseaseViral LoadAntigens, CD34CD146 AntigenMCAM protein, human

Identifiers

PMID25331524
PMCPMC4340762
OpenAlexW1975324590

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.