Evidence map›Paper›PMID 25331112›Full record

ArticleBlood2014

TAILS N-terminomics of human platelets reveals pervasive metalloproteinase-dependent proteolytic processing in storage.

Anna Prudova, Katherine Serrano, Ulrich Eckhard, Nikolaus Fortelny, Dana V Devine, Christopher M Overall

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 62 citations in OpenAlex.

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  10. Post-translational Modifications of the Protein Termini.Frontiers in cell and developmental biology · 2021
    Review
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  20. Quantitative proteomics and terminomics to elucidate the role of ubiquitination and proteolysis in adaptive immunity.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Anna PrudovaCentre for Blood Research, and Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada;
Katherine SerranoCentre for Blood Research, and Canadian Blood Services, Vancouver, BC, Canada; and.ORCID http://orcid.org/0000-0002-5259-4897
Ulrich EckhardCentre for Blood Research, and Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada;ORCID http://orcid.org/0000-0001-5863-4514
Nikolaus FortelnyCentre for Blood Research, and Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada.ORCID http://orcid.org/0000-0003-4025-9968
Dana V DevineCentre for Blood Research, and Canadian Blood Services, Vancouver, BC, Canada; and Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada.
Christopher M OverallCentre for Blood Research, and Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada; Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada.
University of British Columbia · CACanadian Blood Services · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

Proteases, and specifically metalloproteinases, have been linked to the loss of platelet function during storage before transfusion, but the underlying mechanisms remain unknown. We used a dedicated N-terminomics technique, iTRAQ terminal amine isotopic labeling of substrates (TAILS), to characterize the human platelet N-terminome, proteome, and posttranslational modifications throughout platelet storage over 9 days under blood-banking conditions. From the identified 2938 proteins and 7503 unique peptides, we characterized N-terminal methionine excision, co- and posttranslational Nα acetylation, protein maturation, and proteolytic processing of proteins in human platelets. We also identified for the first time 10 proteins previously classified by the Human Proteome Organization as "missing" in the human proteome. Most N termini (77%) were internal neo-N termini (105 were novel potential alternative translation start sites, and 2180 represented stable proteolytic products), thus highlighting a prominent yet previously uncharacterized role of proteolytic processing during platelet storage. Protease inhibitor studies revealed metalloproteinases as being primarily responsible for proteolytic processing (as opposed to degradation) during storage. System-wide identification of metalloproteinase and other proteinase substrates and their respective cleavage sites suggests novel mechanisms of the effect of proteases on protein activity and platelet function during storage. All data sets and metadata are available through ProteomeXchange with the data set identifier PXD000906.

Indexed as

Amino Acid SequenceBlood PlateletsBlood PreservationBlood ProteinsHumansIsotope LabelingMass SpectrometryMetalloproteasesMolecular Sequence DataPeptide HydrolasesProtein Processing, Post-TranslationalProtein Structure, TertiaryProteolysisProteomeProteomicsSpecimen HandlingBlood ProteinsMetalloproteasesPeptide HydrolasesProteome

Identifiers

PMID25331112
PMCPMC4271184
OpenAlexW2000717209

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.