Evidence map›Paper›PMID 25330340›Full record

ArticlePLoS pathogens2014

MicroRNAs suppress NB domain genes in tomato that confer resistance to Fusarium oxysporum.

Shouqiang Ouyang, Gyungsoon Park, Hagop S Atamian, Cliff S Han, Jason E Stajich, Isgouhi Kaloshian, Katherine A Borkovich

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
15.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 185 citations in OpenAlex.

  1. Article
  2. An EndophyticJournal of fungi (Basel, Switzerland) · 2026
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Arbuscular mycorrhizal fungi andFrontiers in plant science · 2025
    Article
  13. Review
  14. Identification of Tomato microRNAs in Late Response toInternational journal of molecular sciences · 2024
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Characterization of microRNAs and Target Genes inPlants (Basel, Switzerland) · 2023
    Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Shouqiang OuyangDepartment of Plant Pathology and Microbiology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, California, United States of America.
Gyungsoon ParkDepartment of Plant Pathology and Microbiology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, California, United States of America.
Hagop S AtamianDepartment of Nematology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, California, United States of America.
Cliff S HanBioscience Division, MS M888, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Jason E StajichDepartment of Plant Pathology and Microbiology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, California, United States of America.
Isgouhi KaloshianDepartment of Nematology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, California, United States of America.
Katherine A BorkovichDepartment of Plant Pathology and Microbiology, Institute for Integrative Genome Biology, University of California, Riverside, Riverside, California, United States of America.
University of California, Riverside · USLos Alamos National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs (miRNAs) suppress the transcriptional and post-transcriptional expression of genes in plants. Several miRNA families target genes encoding nucleotide-binding site-leucine-rich repeat (NB-LRR) plant innate immune receptors. The fungus Fusarium oxysporum f. sp. lycopersici causes vascular wilt disease in tomato. We explored a role for miRNAs in tomato defense against F. oxysporum using comparative miRNA profiling of susceptible (Moneymaker) and resistant (Motelle) tomato cultivars. slmiR482f and slmiR5300 were repressed during infection of Motelle with F. oxysporum. Two predicted mRNA targets each of slmiR482f and slmiR5300 exhibited increased expression in Motelle and the ability of these four targets to be regulated by the miRNAs was confirmed by co-expression in Nicotiana benthamiana. Silencing of the targets in the resistant Motelle cultivar revealed a role in fungal resistance for all four genes. All four targets encode proteins with full or partial nucleotide-binding (NB) domains. One slmiR5300 target corresponds to tm-2, a susceptible allele of the Tomato Mosaic Virus resistance gene, supporting functions in immunity to a fungal pathogen. The observation that none of the targets correspond to I-2, the only known resistance (R) gene for F. oxysporum in tomato, supports roles for additional R genes in the immune response. Taken together, our findings suggest that Moneymaker is highly susceptible because its potential resistance is insufficiently expressed due to the action of miRNAs.

Indexed as

AllelesBinding SitesFusariumMicroRNAsNucleotidesSignal TransductionSolanum lycopersicumTobamovirusMicroRNAsNucleotides

Identifiers

PMID25330340
PMCPMC4199772
OpenAlexW1979604069

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.