Evidence map›Paper›PMID 25329995›Full record

ArticlePloS one2014

Plasma metabolomics in human pulmonary tuberculosis disease: a pilot study.

Jennifer K Frediani, Dean P Jones, Nestan Tukvadze, Karan Uppal, Eka Sanikidze, Maia Kipiani, ViLinh T Tran, Gautam Hebbar, Douglas I Walker, Russell R Kempker and 7 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 155 citations in OpenAlex.

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  12. Model systems to studyFrontiers in cellular and infection microbiology · 2025
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  18. ALTERATIONS IN HISTIDINE METABOLISM IS A FEATURE OF EARLY AUTOSOMAL DOMINANT POLYCYSTIC KIDNEY DISEASE (ADPKD).Transactions of the American Clinical and Climatological Association · 2024
    Article
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31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Jennifer K FredianiNutrition and Health Sciences, Graduate Division of Biological and Biomedical Sciences, Laney Graduate School, Emory University, Atlanta, Georgia, United States of America; Center for Clinical and Molecular Nutrition, Emory University School of Medicine, Atlanta, Georgia, United States of America; Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America.
Dean P JonesNutrition and Health Sciences, Graduate Division of Biological and Biomedical Sciences, Laney Graduate School, Emory University, Atlanta, Georgia, United States of America; Center for Clinical and Molecular Nutrition, Emory University School of Medicine, Atlanta, Georgia, United States of America; Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America.
Nestan TukvadzeNational Center for Tuberculosis and Lung Disease, Tbilisi, Georgia.
Karan UppalDepartment of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America.
Eka SanikidzeNational Center for Tuberculosis and Lung Disease, Tbilisi, Georgia.
Maia KipianiNational Center for Tuberculosis and Lung Disease, Tbilisi, Georgia.
ViLinh T TranDepartment of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America.
Gautam HebbarDepartment of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America.
Douglas I WalkerDepartment of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America; Department of Civil and Environmental Engineering, Tufts University, Medford, Massachusetts, United States of America.
Russell R KempkerDepartment of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America.
Shaheen S KuraniDepartment of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America.
Romain A ColasCenter for Experimental Therapeutics and Reperfusion Injury, Harvard Medical School, Boston, Massachusetts, United States of America.
Jesmond DalliCenter for Experimental Therapeutics and Reperfusion Injury, Harvard Medical School, Boston, Massachusetts, United States of America.
Vin TangprichaNutrition and Health Sciences, Graduate Division of Biological and Biomedical Sciences, Laney Graduate School, Emory University, Atlanta, Georgia, United States of America; Center for Clinical and Molecular Nutrition, Emory University School of Medicine, Atlanta, Georgia, United States of America; Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America; Atlanta Veterans Affairs Medical Center, Decatur, Georgia, United States of America.
Charles N SerhanCenter for Experimental Therapeutics and Reperfusion Injury, Harvard Medical School, Boston, Massachusetts, United States of America.
Henry M BlumbergDepartment of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America; National Center for Tuberculosis and Lung Disease, Tbilisi, Georgia; Department of Epidemiology, Rollins School of Public Health, Emory University, Atlanta, Georgia, United States of America.
Thomas R ZieglerNutrition and Health Sciences, Graduate Division of Biological and Biomedical Sciences, Laney Graduate School, Emory University, Atlanta, Georgia, United States of America; Center for Clinical and Molecular Nutrition, Emory University School of Medicine, Atlanta, Georgia, United States of America; Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America.
Emory University · USHarvard University · USNational Center for Tuberculosis and Lung Disease · GETufts University · US

Funding

Atlanta Clinical and Translational Science Institute (ACTSI) RenewalUL1TR000454 · NCATS · EMORY UNIVERSITY · PI STEPHENS, DAVID S · 2012 to 2016
$25.8M
Pilot Project ProgramP30ES019776 · NIEHS · EMORY UNIVERSITY · PI Carmen Joseph Marsit · 2013 to 2026
$22.6M
Resolution Mechanisms in Acute Inflammation: Resolution PharmacologyP01GM095467 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI SERHAN, CHARLES NICHOLAS · 2011 to 2020
$14.8M
Graduate and Postdoctoral Training in ToxicologyT32ES012870 · NIEHS · EMORY UNIVERSITY · PI Carmen Joseph Marsit · 2004 to 2026
$9.1M
PROJECT 3: METABOLOMIC BIOMARKERS OF PARKINSON'S DISEASEP01ES016731 · NIEHS · EMORY UNIVERSITY · PI MILLER, GARY W · 2008 to 2012
$6.7M
Emory-Georgia TB Research Training ProgramD43TW007124 · FIC · EMORY UNIVERSITY · PI HENRY M BLUMBERG, Nestani Tukvadze · 2004 to 2026
$4.6M
Metabolomics of subclinical and clinical cardiovascular diseaseP20HL113451 · NHLBI · EMORY UNIVERSITY · PI JONES, DEAN PAUL · 2012 to 2016
$4.3M
A metabolomic model of aging in the common marmosetR01AG038746 · NIA · EMORY UNIVERSITY · PI JONES, DEAN PAUL, PROMISLOW, DANIEL EDWARD · 2010 to 2014
$2.5M
Intra Cavitary Pharmacokinetics and Drug Resistance in Pulmonary TuberculosisK23AI103044 · NIAID · EMORY UNIVERSITY · PI KEMPKER, RUSSELL RYAN · 2013 to 2017
$910k
Patient Oriented Research In Clinical NutritionK24DK096574 · NIDDK · EMORY UNIVERSITY · PI ZIEGLER, THOMAS R · 2012 to 2016
$888k
Role of T-cells in Osteoporosis in Women Undergoing Surgical MenopauseK23AR054334 · NIAMS · EMORY UNIVERSITY · PI TANGPRICHA, VIN · 2007 to 2011
$641k
FIC NIH HHS D43 TW007124NCATS NIH HHS UL1 TR000454NHLBI NIH HHS P20 HL113451NHLBI NIH HHS P20HL113451NIAID NIH HHS HHSN272201200031CNIAID NIH HHS K23 AI103044NIAMS NIH HHS K23 AR054334NIA NIH HHS R01 AG038746NIDDK NIH HHS K24 DK096574NIEHS NIH HHS P01 ES016731NIEHS NIH HHS P30 ES019776NIEHS NIH HHS P30ES019776NIEHS NIH HHS R01 ES016731NIEHS NIH HHS T32 ES012870NIGMS NIH HHS P01 GM095467
6 · The paper itself

Abstract

We aimed to characterize metabolites during tuberculosis (TB) disease and identify new pathophysiologic pathways involved in infection as well as biomarkers of TB onset, progression and resolution. Such data may inform development of new anti-tuberculosis drugs. Plasma samples from adults with newly diagnosed pulmonary TB disease and their matched, asymptomatic, sputum culture-negative household contacts were analyzed using liquid chromatography high-resolution mass spectrometry (LC-MS) to identify metabolites. Statistical and bioinformatics methods were used to select accurate mass/charge (m/z) ions that were significantly different between the two groups at a false discovery rate (FDR) of q<0.05. Two-way hierarchical cluster analysis (HCA) was used to identify clusters of ions contributing to separation of cases and controls, and metabolomics databases were used to match these ions to known metabolites. Identity of specific D-series resolvins, glutamate and Mycobacterium tuberculosis (Mtb)-derived trehalose-6-mycolate was confirmed using LC-MS/MS analysis. Over 23,000 metabolites were detected in untargeted metabolomic analysis and 61 metabolites were significantly different between the two groups. HCA revealed 8 metabolite clusters containing metabolites largely upregulated in patients with TB disease, including anti-TB drugs, glutamate, choline derivatives, Mycobacterium tuberculosis-derived cell wall glycolipids (trehalose-6-mycolate and phosphatidylinositol) and pro-resolving lipid mediators of inflammation, known to stimulate resolution, efferocytosis and microbial killing. The resolvins were confirmed to be RvD1, aspirin-triggered RvD1, and RvD2. This study shows that high-resolution metabolomic analysis can differentiate patients with active TB disease from their asymptomatic household contacts. Specific metabolites upregulated in the plasma of patients with active TB disease, including Mtb-derived glycolipids and resolvins, have potential as biomarkers and may reveal pathways involved in TB disease pathogenesis and resolution.

Indexed as

MetabolomicsAdultAntitubercular AgentsComputational BiologyFemaleHumansInactivation, MetabolicMaleMycobacterium tuberculosisPilot ProjectsSputumTandem Mass SpectrometryTuberculosis, PulmonaryYoung AdultAntitubercular Agents

Identifiers

PMID25329995
PMCPMC4198093
OpenAlexW2089618876

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.