Evidence map›Paper›PMID 25329411›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2015

Contrasting roles for MyoD in organizing myogenic promoter structures during embryonic skeletal muscle development.

Ok Hyun Cho, Chandrashekara Mallappa, J Manuel Hernández-Hernández, Jaime A Rivera-Pérez, Anthony N Imbalzano

Abstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Mitochondrial Function in Muscle Stem Cell Fates.Frontiers in cell and developmental biology · 2020
    Review
  12. Review
  13. Review
  14. Temporal regulation of chromatin during myoblast differentiation.Seminars in cell & developmental biology · 2017
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ok Hyun ChoDepartment of Cell and Developmental Biology, University of Massachusetts Medical School, Worcester, Massachusetts.
Chandrashekara Mallappa
J Manuel Hernández-Hernández
Jaime A Rivera-Pérez
Anthony N Imbalzano

Funding

TRANSCRIPTION FACTOR FUNCTION IN CHROMATINR01GM056244 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI IMBALZANO, ANTHONY N · 1997 to 2019
$6.7M
Visceral Endoderm Fate and Signals in Mammalian DevelopmentR01GM087130 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RIVERA-PEREZ, JAIME A. · 2008 to 2012
$1.7M
Epiblast Complementation ChimerasR01GM094874 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RIVERA-PEREZ, JAIME A. · 2010 to 2013
$1.3M
NIGMS NIH HHS GM56244NIGMS NIH HHS GM87130NIGMS NIH HHS GM94874NIGMS NIH HHS R01 GM056244NIGMS NIH HHS R01 GM087130NIGMS NIH HHS R01 GM094874
6 · The paper itself

Abstract

backgroundAmong the complexities of skeletal muscle differentiation is a temporal distinction in the onset of expression of different lineage-specific genes. The lineage-determining factor MyoD is bound to myogenic genes at the onset of differentiation whether gene activation is immediate or delayed. How temporal regulation of differentiation-specific genes is established remains unclear.

resultsUsing embryonic tissue, we addressed the molecular differences in the organization of the myogenin and muscle creatine kinase (MCK) gene promoters by examining regulatory factor binding as a function of both time and spatial organization during somitogenesis. At the myogenin promoter, binding of the homeodomain factor Pbx1 coincided with H3 hyperacetylation and was followed by binding of co-activators that modulate chromatin structure. MyoD and myogenin binding occurred subsequently, demonstrating that Pbx1 facilitates chromatin remodeling and modification before myogenic regulatory factor binding. At the same time, the MCK promoter was bound by HDAC2 and MyoD, and activating histone marks were largely absent. The association of HDAC2 and MyoD was confirmed by co-immunoprecipitation, proximity ligation assay (PLA), and sequential ChIP.

conclusionsMyoD differentially promotes activated and repressed chromatin structures at myogenic genes early after the onset of skeletal muscle differentiation in the developing mouse embryo.

Indexed as

AnimalsChromatin Assembly and DisassemblyEmbryo, MammalianGene Expression Regulation, DevelopmentalHistone Deacetylase 2Homeodomain ProteinsMiceMuscle DevelopmentMuscle, SkeletalMyoD ProteinPre-B-Cell Leukemia Transcription Factor 1Promoter Regions, GeneticTranscription FactorsHdac2 protein, mouseHistone Deacetylase 2Homeodomain ProteinsMyoD1 myogenic differentiation proteinMyoD ProteinPbx1 protein, mousePre-B-Cell Leukemia Transcription Factor 1Transcription Factorsgene expressiongene regulationhistone deacetylasemyogenesisPbxsomite

Identifiers

PMID25329411
PMCPMC4276533

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.