Evidence map›Paper›PMID 25328913›Full record

ArticleProceedings of the ... International Conference on Information Technology: New Generations. International Conference on Information Technology: New Generations2012

An Open-Source Sandbox for Increasing the Accessibility of Functional Programming to the Bioinformatics and Scientific Communities.

Matthew Fenwick, Colbert Sesanker, Martin R Schiller, Heidi Jc Ellis, M Lee Hinman, Jay Vyas, Michael R Gryk

Abstract read
In one paragraph

Article in Proceedings of the ... International Conference on Information Technology: New Generations. International Conference on Information Technology: New Generations, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. The genomic CDS sandbox: An assessment among domain experts.Journal of biomedical informatics · 2016
    Article
  3. Article
  4. Parser Combinators: a Practical Application for Generating Parsers for NMR Data.Proceedings of the ... International Conference on Information Technology: New Generations. International Conference on Information Technology: New Generations · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Matthew FenwickDepartment of Microbial, Molecular and Structural Biology, University of Connecticut Health Center, 263 Farmington Avenue Farmington, Connecticut 06030.
Colbert SesankerSchool of Life Sciences, University of Nevada Las Vegas, 4505 Maryland Pkwy., Las Vegas 89154-4004.
Martin R SchillerDepartment of Computer Science/Information Technology, Western New England University, Springfield, Massachusetts.
Heidi Jc Ellis
M Lee Hinman
Jay Vyas
Michael R Gryk

Funding

CONNJUR: A Software Integration Platform for Biomolecular NMR SpectroscopyR01GM083072 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRYK, MICHAEL R · 2009 to 2012
$1.2M
NIGMS NIH HHS R01 GM083072
6 · The paper itself

Abstract

Scientists are continually faced with the need to express complex mathematical notions in code. The renaissance of functional languages such as LISP and Haskell is often credited to their ability to implement complex data operations and mathematical constructs in an expressive and natural idiom. The slow adoption of functional computing in the scientific community does not, however, reflect the congeniality of these fields. Unfortunately, the learning curve for adoption of functional programming techniques is steeper than that for more traditional languages in the scientific community, such as Python and Java, and this is partially due to the relative sparseness of available learning resources. To fill this gap, we demonstrate and provide applied, scientifically substantial examples of functional programming, We present a multi-language source-code repository for software integration and algorithm development, which generally focuses on the fields of machine learning, data processing, bioinformatics. We encourage scientists who are interested in learning the basics of functional programming to adopt, reuse, and learn from these examples. The source code is available at: https://github.com/CONNJUR/CONNJUR-Sandbox (see also http://www.connjur.org).

Indexed as

bioinformaticsClojurecomponentfunctional-programmingHaskellJavaLISPNMR

Identifiers

PMID25328913
PMCPMC4197993

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.