Evidence map›Paper›PMID 25327251›Full record

ArticleNature2015

Reductive dehalogenase structure suggests a mechanism for B12-dependent dehalogenation.

Karl Ap Payne, Carolina P Quezada, Karl Fisher, Mark S Dunstan, Fraser A Collins, Hanno Sjuts, Colin Levy, Sam Hay, Stephen Ej Rigby, David Leys

Open access · greenAbstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed, 1 pooled it
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 1 synthesis or guideline pooled it, 313 citations in OpenAlex.

  1. Pooled it
  2. Comparative genomics revealsApplied and environmental microbiology · 2026
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  7. Developing anApplied and environmental microbiology · 2026
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  13. Effects of vitamin BApplied and environmental microbiology · 2025
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  14. Article
  15. Review
  16. Vitamin BMicrobiologyOpen · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Reductive dehalogenase ofFrontiers in microbiology · 2024
    Article

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Karl Ap Payne *Manchester Institute for Biotechnology, University of Manchester, Princess Street 131 M1 7DN Manchester, UK.
Carolina P Quezada *Manchester Institute for Biotechnology, University of Manchester, Princess Street 131 M1 7DN Manchester, UK.
Karl FisherManchester Institute for Biotechnology, University of Manchester, Princess Street 131 M1 7DN Manchester, UK.
Mark S DunstanManchester Institute for Biotechnology, University of Manchester, Princess Street 131 M1 7DN Manchester, UK.
Fraser A CollinsManchester Institute for Biotechnology, University of Manchester, Princess Street 131 M1 7DN Manchester, UK.
Hanno SjutsManchester Institute for Biotechnology, University of Manchester, Princess Street 131 M1 7DN Manchester, UK.
Colin LevyManchester Institute for Biotechnology, University of Manchester, Princess Street 131 M1 7DN Manchester, UK.
Sam HayManchester Institute for Biotechnology, University of Manchester, Princess Street 131 M1 7DN Manchester, UK.
Stephen Ej RigbyManchester Institute for Biotechnology, University of Manchester, Princess Street 131 M1 7DN Manchester, UK.
David LeysManchester Institute for Biotechnology, University of Manchester, Princess Street 131 M1 7DN Manchester, UK.
University of Manchester · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C00521X/1Biotechnology and Biological Sciences Research Council BB/E013007/1Biotechnology and Biological Sciences Research Council BB/H021523/1European Research Council 206080
6 · The paper itself

Abstract

Organohalide chemistry underpins many industrial and agricultural processes, and a large proportion of environmental pollutants are organohalides. Nevertheless, organohalide chemistry is not exclusively of anthropogenic origin, with natural abiotic and biological processes contributing to the global halide cycle. Reductive dehalogenases are responsible for biological dehalogenation in organohalide respiring bacteria, with substrates including polychlorinated biphenyls or dioxins. Reductive dehalogenases form a distinct subfamily of cobalamin (B12)-dependent enzymes that are usually membrane associated and oxygen sensitive, hindering detailed studies. Here we report the characterization of a soluble, oxygen-tolerant reductive dehalogenase and, by combining structure determination with EPR (electron paramagnetic resonance) spectroscopy and simulation, show that a direct interaction between the cobalamin cobalt and the substrate halogen underpins catalysis. In contrast to the carbon-cobalt bond chemistry catalysed by the other cobalamin-dependent subfamilies, we propose that reductive dehalogenases achieve reduction of the organohalide substrate via halogen-cobalt bond formation. This presents a new model in both organohalide and cobalamin (bio)chemistry that will guide future exploitation of these enzymes in bioremediation or biocatalysis.

Indexed as

HalogenationBiocatalysisCobaltCrystallography, X-RayElectron Spin Resonance SpectroscopyModels, MolecularOxidation-ReductionOxidoreductasesOxygenPhenolsPhyllobacteriaceaeProtein ConformationSolubilityVitamin B 122,6-dibromophenolCobaltOxidoreductasesOxygenPhenolsVitamin B 12

Identifiers

PMID25327251
PMCPMC4968649
OpenAlexW2123527154

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.