Evidence map›Paper›PMID 25326701›Full record

ArticleNature genetics2014

Palindromic GOLGA8 core duplicons promote chromosome 15q13.3 microdeletion and evolutionary instability.

Francesca Antonacci, Megan Y Dennis, John Huddleston, Peter H Sudmant, Karyn Meltz Steinberg, Jill A Rosenfeld, Mattia Miroballo, Tina A Graves, Laura Vives, Maika Malig and 9 more

Abstract read
In one paragraph

Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

  1. Trial
  2. Article
  3. Distinct mechanisms of CNV formation at the human 15q13.3 locus.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Human-specific gene expansions contribute to brain evolution.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Genome research · 2024
    Article
  11. Complete sequencing of ape genomes.bioRxiv : the preprint server for biology · 2024
    Article
  12. Structural polymorphism and diversity of human segmental duplications.bioRxiv : the preprint server for biology · 2024
    Article
  13. Review
  14. Article
  15. Article
  16. Structural Variation Evolution at the 15q11-q13 Disease-Associated Locus.International journal of molecular sciences · 2023
    Article
  17. Review
  18. Article
  19. Review
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Francesca AntonacciDipartimento di Biologia, Università degli Studi di Bari Aldo Moro, Bari, Italy.
Megan Y DennisDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
John Huddleston1] Department of Genome Sciences, University of Washington, Seattle, Washington, USA. [2] Howard Hughes Medical Institute, University of Washington, Seattle, Washington, USA.
Peter H SudmantDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Karyn Meltz SteinbergGenome Institute at Washington University, Washington University School of Medicine, St. Louis, Missouri, USA.
Jill A RosenfeldSignature Genomic Laboratories, LLC, Spokane, Washington, USA.ORCID 0000000156647987
Mattia MiroballoDipartimento di Biologia, Università degli Studi di Bari Aldo Moro, Bari, Italy.
Tina A GravesGenome Institute at Washington University, Washington University School of Medicine, St. Louis, Missouri, USA.
Laura Vives1] Department of Genome Sciences, University of Washington, Seattle, Washington, USA. [2] Howard Hughes Medical Institute, University of Washington, Seattle, Washington, USA.
Maika MaligDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Laura DenmanDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Archana Raja1] Department of Genome Sciences, University of Washington, Seattle, Washington, USA. [2] Howard Hughes Medical Institute, University of Washington, Seattle, Washington, USA.
Andrew StuartBenaroya Research Institute at Virginia Mason, Seattle, Washington, USA.
Joyce TangBenaroya Research Institute at Virginia Mason, Seattle, Washington, USA.
Brenton MunsonDepartment of Genome Sciences, University of Washington, Seattle, Washington, USA.
Lisa G Shaffer1] Signature Genomic Laboratories, LLC, Spokane, Washington, USA. [2] Genetic Veterinary Sciences, Inc., Paw Print Genetics, Spokane, Washington, USA.
Chris T AmemiyaBenaroya Research Institute at Virginia Mason, Seattle, Washington, USA.
Richard K WilsonGenome Institute at Washington University, Washington University School of Medicine, St. Louis, Missouri, USA.
Evan E Eichler1] Department of Genome Sciences, University of Washington, Seattle, Washington, USA. [2] Howard Hughes Medical Institute, University of Washington, Seattle, Washington, USA.

Funding

Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
Sequencing and Clone CharacterizationP01HG004120 · NHGRI · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 2007 to 2013
$7.7M
Characterization of Human-Specific Duplicated Genes Implicated in NeurocognitiveK99NS083627 · NINDS · UNIVERSITY OF WASHINGTON · PI DENNIS, MEGAN Y · 2013 to 2014
$180k
Howard Hughes Medical InstituteNHGRI NIH HHS HG002385NHGRI NIH HHS HG004120NHGRI NIH HHS P01 HG004120NHGRI NIH HHS R01 HG002385NINDS NIH HHS K99 NS083627NINDS NIH HHS K99NS083627
6 · The paper itself

Abstract

Recurrent deletions of chromosome 15q13.3 associate with intellectual disability, schizophrenia, autism and epilepsy. To gain insight into the instability of this region, we sequenced it in affected individuals, normal individuals and nonhuman primates. We discovered five structural configurations of the human chromosome 15q13.3 region ranging in size from 2 to 3 Mb. These configurations arose recently (∼0.5-0.9 million years ago) as a result of human-specific expansions of segmental duplications and two independent inversion events. All inversion breakpoints map near GOLGA8 core duplicons-a ∼14-kb primate-specific chromosome 15 repeat that became organized into larger palindromic structures. GOLGA8-flanked palindromes also demarcate the breakpoints of recurrent 15q13.3 microdeletions, the expansion of chromosome 15 segmental duplications in the human lineage and independent structural changes in apes. The significant clustering (P = 0.002) of breakpoints provides mechanistic evidence for the role of this core duplicon and its palindromic architecture in promoting the evolutionary and disease-related instability of chromosome 15.

Indexed as

Repetitive Sequences, Nucleic AcidSegmental Duplications, GenomicAnimalsBiological EvolutionChromosome DeletionChromosome DisordersChromosomes, Artificial, BacterialChromosomes, Human, Pair 15Cluster AnalysisComparative Genomic HybridizationGene DosageGenome, HumanHumansIn Situ Hybridization, FluorescenceIntellectual DisabilityModels, Genetic

Identifiers

PMID25326701
PMCPMC4244265

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.