Evidence map›Paper›PMID 25326387›Full record

ArticleThe Journal of biological chemistry2014

Structure-function analyses of human kallikrein-related peptidase 2 establish the 99-loop as master regulator of activity.

Wolfgang Skala, Daniel T Utzschneider, Viktor Magdolen, Mekdes Debela, Shihui Guo, Charles S Craik, Hans Brandstetter, Peter Goettig

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Drug Discovery Strategies for Kallikrein-Related Peptidases.International journal of molecular sciences · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Wolfgang SkalaFrom the Division of Structural Biology, Department of Molecular Biology, University of Salzburg, A-5020 Salzburg, Austria.
Daniel T UtzschneiderKlinische Forschergruppe der Frauenklinik, Klinikum rechts der Isar der TU München, D-81675 Munich, Germany.
Viktor MagdolenKlinische Forschergruppe der Frauenklinik, Klinikum rechts der Isar der TU München, D-81675 Munich, Germany.
Mekdes DebelaMax-Planck-Institut for Biochemistry, Proteinase Research Group, D-82152 Martinsried, Germany, and.
Shihui GuoFrom the Division of Structural Biology, Department of Molecular Biology, University of Salzburg, A-5020 Salzburg, Austria.
Charles S CraikDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California 94143.
Hans BrandstetterFrom the Division of Structural Biology, Department of Molecular Biology, University of Salzburg, A-5020 Salzburg, Austria.
Peter GoettigFrom the Division of Structural Biology, Department of Molecular Biology, University of Salzburg, A-5020 Salzburg, Austria, peter.goettig@sbg.ac.at.
University of Salzburg · ATKlinikum rechts der Isar · DEUniversity of California, San Francisco · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human kallikrein-related peptidase 2 (KLK2) is a tryptic serine protease predominantly expressed in prostatic tissue and secreted into prostatic fluid, a major component of seminal fluid. Most likely it activates and complements chymotryptic KLK3 (prostate-specific antigen) in cleaving seminal clotting proteins, resulting in sperm liquefaction. KLK2 belongs to the "classical" KLKs 1-3, which share an extended 99- or kallikrein loop near their non-primed substrate binding site. Here, we report the 1.9 Å crystal structures of two KLK2-small molecule inhibitor complexes. In both structures discontinuous electron density for the 99-loop indicates that this loop is largely disordered. We provide evidence that the 99-loop is responsible for two biochemical peculiarities of KLK2, i.e. reversible inhibition by micromolar Zn(2+) concentrations and permanent inactivation by autocatalytic cleavage. Indeed, several 99-loop mutants of KLK2 displayed an altered susceptibility to Zn(2+), which located the Zn(2+) binding site at the 99-loop/active site interface. In addition, we identified an autolysis site between residues 95e and 95f in the 99-loop, whose elimination prevented the mature enzyme from limited autolysis and irreversible inactivation. An exhaustive comparison of KLK2 with related structures revealed that in the KLK family the 99-, 148-, and 220-loop exist in open and closed conformations, allowing or preventing substrate access, which extends the concept of conformational selection in trypsin-related proteases. Taken together, our novel biochemical and structural data on KLK2 identify its 99-loop as a key player in activity regulation.

Indexed as

Amino Acid SequenceCations, DivalentCrystallography, X-RayEscherichia coliHumansKallikreinsKineticsModels, MolecularMolecular Sequence DataMutationProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsSequence AlignmentStructure-Activity RelationshipZincCations, DivalentKallikreinsKLK2 protein, humanRecombinant ProteinsZinc99-LoopAutolytic CleavageConformational SelectionCrystallographyEnzyme KineticsKallikreinProstate CancerSerine ProteaseSubstrate SpecificityZinc Inhibition

Identifiers

PMID25326387
PMCPMC4256358
OpenAlexW2013050330

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.