Evidence map›Paper›PMID 25326282›Full record

ArticleJournal of biomolecular screening2015

Novel high-throughput deoxyribonuclease 1 assay.

Dae Song Jang, Narsimha R Penthala, Eugene O Apostolov, Xiaoying Wang, Tariq Fahmi, Peter A Crooks, Alexei G Basnakian

Open access · bronzeAbstract read
In one paragraph

Article in Journal of biomolecular screening, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Dae Song JangDepartment of Pharmacology & Toxicology, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Narsimha R PenthalaDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Eugene O ApostolovDepartment of Pharmacology & Toxicology, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Xiaoying WangDepartment of Pharmacology & Toxicology, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Tariq FahmiDepartment of Pharmacology & Toxicology, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Peter A CrooksDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Alexei G BasnakianDepartment of Pharmacology & Toxicology, University of Arkansas for Medical Sciences, Little Rock, AR, USA Renal Medicine Service, Central Arkansas Veterans Healthcare System, Little Rock, AR, USA basnakianalexeig@uams.edu.
University of Arkansas for Medical Sciences · US

Funding

Understanding Hesitant AdoptersP20GM103429 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI Lawrence E Cornett, JERRY WARE · 2012 to 2026
$60.9M
VIRULENCE MECHANISMS IN ESCHERICHIA COLIP20RR016460 · NCRR · UNIV OF ARKANSAS FOR MED SCIS · PI HENSLEY, LORI · 2001 to 2011
$33.1M
Development of Small Molecule Radiation SensitizersR01CA140409 · NCI · VANDERBILT UNIVERSITY · PI FREEMAN, MICHAEL L., KONJETI, SEKHAR RAJA · 2010 to 2014
$1.7M
Premortem enzymatic DNA damage in kidney injuryR01DK078908 · NIDDK · UNIV OF ARKANSAS FOR MED SCIS · PI BASNAKIAN, ALEXEI G · 2008 to 2012
$1.5M
Novel endonuclease-targeted approaches to nephroprotectionI01BX000690 · VA · CENTRAL ARKANSAS VETERANS HLTHCARE SYS · PI BASNAKIAN, ALEXEI G · 2009 to 2013
–
Nuclease mechanisms in acute kidney injuryI01BX002425 · VA · CENTRAL ARKANSAS VETERANS HLTHCARE SYS · PI Alexei G Basnakian · 2015 to 2026
–
BLRD VA I01 BX000690BLRD VA I01 BX002425NCI NIH HHS R01 CA140409NCRR NIH HHS P20 RR016460NCRR NIH HHS P20 RR016460-11NIDDK NIH HHS R01 DK078908NIDDK NIH HHS R01DK078908NIGMS NIH HHS P20 GM103429NIGMS NIH HHS P20 GM103429-11
6 · The paper itself

Abstract

Deoxyribonuclease I (DNase I), the most active and abundant apoptotic endonuclease in mammals, is known to mediate toxic, hypoxic, and radiation injuries to the cell. Neither inhibitors of DNase I nor high-throughput methods for screening of high-volume chemical libraries in search of DNase I inhibitors are, however, available. To overcome this problem, we developed a high-throughput DNase I assay. The assay is optimized for a 96-well plate format and based on the increase of fluorescence intensity when fluorophore-labeled oligonucleotide is degraded by the DNase. The assay is highly sensitive to DNase I compared to other endonucleases, reliable (Z' ≥ 0.5), and operationally simple, and it has low operator, intraassay, and interassay variability. The assay was used to screen a chemical library, and several potential DNase I inhibitors were identified. After comparison, 2 hit compounds were selected and shown to protect against cisplatin-induced kidney cell death in vitro. This assay will be suitable for identifying inhibitors of DNase I and, potentially, other endonucleases.

Indexed as

High-Throughput Screening AssaysAnimalsCell LineDeoxyribonuclease IEnzyme ActivationEnzyme AssaysEnzyme InhibitorsInhibitory Concentration 50RatsReproducibility of ResultsSmall Molecule LibrariesSubstrate SpecificityDeoxyribonuclease IEnzyme InhibitorsSmall Molecule LibrariescisplatinDNase Ihigh-throughput assaykidneynear-infrared fluorescence

Identifiers

PMID25326282
PMCPMC4564109
OpenAlexW2037919274

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.