Evidence map›Paper›PMID 25326263›Full record

ArticlePlant molecular biology2014

Methylation of the S f locus in almond is associated with S-RNase loss of function.

Angel Fernández i Martí, Thomas M Gradziel, Rafel Socias i Company

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Review
  3. Exploring the wild almond,Tree genetics & genomes · 2024
    Article
  4. Article
  5. Review
  6. Genome-wide identification of members of thePhysiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  7. Downregulated expression of SHorticulture research · 2021
    Article
  8. Article
  9. Frontiers in genetics · 2021
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. DNA Methylation Analysis of Dormancy Release in Almond (International journal of molecular sciences · 2018
    Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Angel Fernández i MartíUnidad de Hortofruticultura, Centro de Investigación y Tecnología Agroalimentaria de Aragón (CITA), Av. Montañana 930, 50059, Saragossa, Spain, afernandezmarti@ucdavis.edu.
Thomas M Gradziel
Rafel Socias i Company
Centro de Investigación y Tecnología Agroalimentaria de Aragón · ESUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Self-compatibility in almond (Prunus dulcis) is attributed to the presence of the S f haplotype, allelic to and dominant over the series of S-alleles controlling self-incompatibility. Some forms of the S f haplotype, however, are phenotypically self-incompatible even though their nucleotide sequences are identical. DNA from leaves and styles from genetically diverse almond samples was cloned and sequenced and then analyzed for changes affecting S f -RNase variants. Epigenetic changes in several cytosine residues were detected in a fragment of 4,700 bp of the 5' upstream region of all self-compatible samples of the S f -RNases, differentiating them from all self-incompatible samples of S f -RNases analyzed. This is the first report of DNA methylation in a Rosaceae species and appears to be strongly associated with inactivation of the S f allele. Results facilitate an understanding of the evolution of self-compatibility/self-incompatibility in almond and other Prunus species, and suggest novel approaches for future crop improvement.

Indexed as

AllelesBase SequenceBiological EvolutionDNA MethylationDNA, PlantEpigenomicsFlowersGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGene SilencingHaplotypesMolecular Sequence DataPhenotypePlant LeavesPlant ProteinsPrunusDNA, PlantPlant ProteinsRibonucleases

Identifiers

PMID25326263
OpenAlexW2008406878

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.