Evidence map›Paper›PMID 25325959›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2015

A transgenic approach to live imaging of heparan sulfate modification patterns.

Matthew Attreed, Hannes E Bülow

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Imaging Glycosaminoglycan Modification Patterns In Vivo.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Matthew AttreedDepartment of Genetics, Albert Einstein College of Medicine of Yeshiva University, Ullmann Building, Room 807, 1300 Morris Park Avenue, Bronx, NY, 10461, USA.
Hannes E Bülow
Albert Einstein College of Medicine · USYeshiva University · US

Funding

TRAINING PROGRAM IN CELLULAR &MOLEC. BIOLOGY &GENETICST32GM007491 · NIGMS · YESHIVA UNIVERSITY · PI QUERY, CHARLES C · 1985 to 2021
$17.0M
Genetic Analyses of Heparan Sulfate Function in Cell-Cell InteractionsR01GM101313 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI BUELOW, HANNES ERICH · 2013 to 2016
$1.3M
Novel Approaches to Structure/Function Analyses of Heparan Sulfate in vivoRC1GM090825 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI BUELOW, HANNES ERICH · 2009 to 2010
$844k
In vivo analysis of the HS codeF31NS076243 · NINDS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI ATTREED, MATTHEW · 2012 to 2013
$71k
NIGMS NIH HHS R01 GM101313NIGMS NIH HHS R01GM101313NIGMS NIH HHS RC1 GM090825NIGMS NIH HHS RC1GM090825NIGMS NIH HHS T32 GM007491NIGMS NIH HHS T32GM07491NINDS NIH HHS F31 NS076243NINDS NIH HHS F31NS076243
6 · The paper itself

Abstract

Heparan sulfate (HS) glycosaminoglycan chains contain highly modified HS domains that are separated by sections of sparse or no modification. HS domains are central to the role of HS in protein binding and mediating protein-protein interactions in the extracellular matrix. Since HS domains are not genetically encoded, they are impossible to visualize and study with conventional methods in vivo. Here we describe a transgenic approach using previously described single chain variable fragment (scFv) antibodies that bind HS in vitro and on tissue sections with different specificities. By engineering a secretion signal and a fluorescent protein to the scFvs and transgenically expressing these fluorescently tagged antibodies in Caenorhabditis elegans, we are able to directly visualize specific HS domains in live animals (Attreed et al. Nat Methods 9(5):477-479, 2012). The approach allows concomitant colabeling of multiple epitopes, the study of HS dynamics and, could lend itself to a genetic analysis of HS domain biosynthesis or to visualize other nongenetically encoded or posttranslational modifications.

Indexed as

Amino Acid SequenceAnimalsAnimals, Genetically ModifiedCaenorhabditis elegansGreen Fluorescent ProteinsHeparan SulfateImaging, Three-DimensionalMicroscopy, FluorescenceMolecular Sequence DataSingle-Chain AntibodiesGreen Fluorescent ProteinsHeparan SulfateSingle-Chain Antibodies

Identifiers

PMID25325959
PMCPMC5893304
OpenAlexW2409346295

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.