Evidence map›Paper›PMID 25325076›Full record

ArticleEcoSal Plus2008

The SOS Regulatory Network.

Lyle A Simmons, James J Foti, Susan E Cohen, Graham C Walker

Open access · greenAbstract read
In one paragraph

Article in EcoSal Plus, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 199 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Deciphering meropenem persistence inAntimicrobial agents and chemotherapy · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Fluoroquinolone Persistence inMicroorganisms · 2022
    Article
  15. Article
  16. CroSMolecular microbiology · 2021
    Article
  17. Article
  18. A newly identified prophage-encoded gene,Journal of bacteriology · 2021
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Lyle A SimmonsDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139.
James J FotiDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139.
Susan E CohenDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139.
Graham C WalkerDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139.
Massachusetts Institute of Technology · US

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ENGELWARD, BEVIN P. · 1985 to 2020
$25.6M
MUTAGENESIS AND REPAIR OF DNAR01CA021615 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WALKER, GRAHAM C · 1985 to 2019
$6.5M
DNA Mismatch Repair in Bacillus subtilisF32CA113124 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SIMMONS, LYLE · 2005 to 2007
$143k
NCI NIH HHS F32 CA113124NCI NIH HHS R01 CA021615NIEHS NIH HHS P30 ES002109
6 · The paper itself

Abstract

All organisms possess a diverse set of genetic programs that are used to alter cellular physiology in response to environmental cues. The gram-negative bacterium,

Identifiers

PMID25325076
PMCPMC4196698
OpenAlexW2032358899

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.