Evidence map›Paper›PMID 25324549›Full record

ArticleThe Journal of biological chemistry2014

Structural identification of the Vps18 β-propeller reveals a critical role in the HOPS complex stability and function.

Heide Behrmann, Anna Lürick, Anne Kuhlee, Henning Kleine Balderhaar, Cornelia Bröcker, Daniel Kümmel, Siegfried Engelbrecht-Vandré, Ulrich Gohlke, Stefan Raunser, Udo Heinemann and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  6. Article
  7. Mucopolysaccharidosis-Plus Syndrome.International journal of molecular sciences · 2020
    Article
  8. Article
  9. Article
  10. Review
  11. Coat/Tether Interactions-Exception or Rule?Frontiers in cell and developmental biology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Heide BehrmannFrom the Max-Delbrück Center for Molecular Medicine, Macromolecular Structure and Interaction Group, Robert-Rössle-Strasse 10, 13125 Berlin, Germany, Freie Universität Berlin, Chemistry and Biochemistry Institute, Takustrasse 6, 14195 Berlin, Germany.
Anna LürickDepartment of Biology/Chemistry, Biochemistry Section, University of Osnabrück, Barbarastrasse 13, 49076 Osnabrück, Germany.
Anne KuhleeDepartment of Structural Biochemistry, Max-Planck Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany, and.
Henning Kleine BalderhaarDepartment of Biology/Chemistry, Biochemistry Section, University of Osnabrück, Barbarastrasse 13, 49076 Osnabrück, Germany.
Cornelia BröckerDepartment of Biology/Chemistry, Biochemistry Section, University of Osnabrück, Barbarastrasse 13, 49076 Osnabrück, Germany.
Daniel KümmelDepartment of Biology/Chemistry, Structural Biology Section, University of Osnabrück, Barbarastrasse 13, 49076 Osnabrück, Germany.
Siegfried Engelbrecht-VandréDepartment of Biology/Chemistry, Biochemistry Section, University of Osnabrück, Barbarastrasse 13, 49076 Osnabrück, Germany.
Ulrich GohlkeFrom the Max-Delbrück Center for Molecular Medicine, Macromolecular Structure and Interaction Group, Robert-Rössle-Strasse 10, 13125 Berlin, Germany.
Stefan RaunserDepartment of Structural Biochemistry, Max-Planck Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany, and.
Udo HeinemannFrom the Max-Delbrück Center for Molecular Medicine, Macromolecular Structure and Interaction Group, Robert-Rössle-Strasse 10, 13125 Berlin, Germany, Freie Universität Berlin, Chemistry and Biochemistry Institute, Takustrasse 6, 14195 Berlin, Germany, heinemann@mdc-berlin.de.
Christian UngermannDepartment of Biology/Chemistry, Biochemistry Section, University of Osnabrück, Barbarastrasse 13, 49076 Osnabrück, Germany, cu@uos.de.
Osnabrück University · DEMax Delbrück Center · DEMax Planck Institute of Molecular Physiology · DEFreie Universität Berlin · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Membrane fusion at the vacuole, the lysosome equivalent in yeast, requires the HOPS tethering complex, which is recruited by the Rab7 GTPase Ypt7. HOPS provides a template for the assembly of SNAREs and thus likely confers fusion at a distinct position on vacuoles. Five of the six subunits in HOPS have a similar domain prediction with strong similarity to COPII subunits and nuclear porins. Here, we show that Vps18 indeed has a seven-bladed β-propeller as its N-terminal domain by revealing its structure at 2.14 Å. The Vps18 N-terminal domain can interact with the N-terminal part of Vps11 and also binds to lipids. Although deletion of the Vps18 N-terminal domain does not preclude HOPS assembly, as revealed by negative stain electron microscopy, the complex is instable and cannot support membrane fusion in vitro. We thus conclude that the β-propeller of Vps18 is required for HOPS stability and function and that it can serve as a starting point for further structural analyses of the HOPS tethering complex.

Indexed as

Adaptor Proteins, Vesicular TransportCOP-Coated VesiclesMultiprotein ComplexesProtein StabilityProtein Structure, SecondaryProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdaptor Proteins, Vesicular TransportMultiprotein ComplexesPEP3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsCrystal StructureEndosomeHOPSMembrane FusionRabSNARE ProteinsTethering ComplexVacuole

Identifiers

PMID25324549
PMCPMC4246104
OpenAlexW2127710408

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.