Evidence map›Paper›PMID 25323954›Full record

ArticleGenome biology and evolution2014

Faster-X effects in two Drosophila lineages.

Victoria Avila, Sophie Marion de Procé, José L Campos, Helen Borthwick, Brian Charlesworth, Andrea J Betancourt

Abstract read
In one paragraph

Article in Genome biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Population genomics ofbioRxiv : the preprint server for biology · 2026
    Article
  4. Review
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  6. Article
  7. Reconciling theories of dominance with the relative rates of adaptive substitution on sex chromosomes and autosomes.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Victoria AvilaInstitute of Evolutionary Biology, University of Edinburgh, United Kingdom Present address: Institute of Biological, Environmental and Rural Sciences, Abertystwyth University, Aberystwyth, United Kingdom.
Sophie Marion de ProcéInstitute of Evolutionary Biology, University of Edinburgh, United Kingdom Present address: MRC Human Genetics Unit, MRC IGMM, University of Edinburgh, Edinburgh, United Kingdom.
José L CamposInstitute of Evolutionary Biology, University of Edinburgh, United Kingdom.
Helen BorthwickInstitute of Evolutionary Biology, University of Edinburgh, United Kingdom.
Brian CharlesworthInstitute of Evolutionary Biology, University of Edinburgh, United Kingdom.
Andrea J BetancourtInstitute of Evolutionary Biology, University of Edinburgh, United Kingdom Present address: Institut for Populationsgenetik, Vetmeduni Vienna, Vienna, Austria andrea.betancourt@vetmeduni.ac.at.

Funding

Biotechnology and Biological Sciences Research Council BB/G003076/1Biotechnology and Biological Sciences Research Council BB/H006028/1Biotechnology and Biological Sciences Research Council BB/H006029/1
6 · The paper itself

Abstract

Under certain circumstances, X-linked loci are expected to experience more adaptive substitutions than similar autosomal loci. To look for evidence of faster-X evolution, we analyzed the evolutionary rates of coding sequences in two sets of Drosophila species, the melanogaster and pseudoobscura clades, using whole-genome sequences. One of these, the pseudoobscura clade, contains a centric fusion between the ancestral X chromosome and the autosomal arm homologous to 3L in D. melanogaster. This offers an opportunity to study the same loci in both an X-linked and an autosomal context, and to compare these loci with those that are only X-linked or only autosomal. We therefore investigated these clades for evidence of faster-X evolution with respect to nonsynonymous substitutions, finding mixed results. Overall, there was consistent evidence for a faster-X effect in the melanogaster clade, but not in the pseudoobscura clade, except for the comparison between D. pseudoobscura and its close relative, Drosophila persimilis. An analysis of polymorphism data on a set of genes from D. pseudoobscura that evolve rapidly with respect to their protein sequences revealed no evidence for a faster-X effect with respect to adaptive protein sequence evolution; their rapid evolution is instead largely attributable to lower selective constraints. Faster-X evolution in the melanogaster clade was not related to male-biased gene expression; surprisingly, however, female-biased genes showed evidence for faster-X effects, perhaps due to their sexually antagonistic effects in males.

Indexed as

AnimalsChromosomesDrosophilaDrosophila melanogasterSelection, GeneticDrosophila melanogasterDrosophila pseudoobscurafaster-X effectpositive selectionsex-biased gene expression

Identifiers

PMID25323954
PMCPMC4224355

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.