Evidence map›Paper›PMID 25320077›Full record

ArticleThe Journal of biological chemistry2014

A novel class of somatic small RNAs similar to germ cell pachytene PIWI-interacting small RNAs.

Nicole Ortogero, Andrew S Schuster, Daniel K Oliver, Connor R Riordan, Annie S Hong, Grant W Hennig, Dickson Luong, Jianqiang Bao, Bhupal P Bhetwal, Seungil Ro and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

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  11. piRDisease v1.0: a manually curated database for piRNA associated diseases.Database : the journal of biological databases and curation · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Nicole OrtogeroFrom the Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada 89557 and.
Andrew S SchusterFrom the Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada 89557 and.
Daniel K OliverFrom the Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada 89557 and.
Connor R RiordanFrom the Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada 89557 and.
Annie S HongFrom the Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada 89557 and.
Grant W HennigFrom the Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada 89557 and.
Dickson LuongFrom the Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada 89557 and.
Jianqiang BaoFrom the Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada 89557 and.
Bhupal P BhetwalFrom the Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada 89557 and.
Seungil RoFrom the Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada 89557 and.
John R McCarreythe Department of Biology, University of Texas at San Antonio, San Antonio, Texas 78249.
Wei YanFrom the Department of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada 89557 and wyan@medicine.nevada.edu.
The University of Texas at San Antonio · US

Funding

STRETCH DEPENDENT POTASSIUM CHANNEL REGULATION IN OVERACTIVE BLADDERP20RR018751 · NCRR · UNIVERSITY OF NEVADA RENO · PI KOH, SANG DON · 2003 to 2011
$17.3M
Single Cell Molecular ExpressionP30GM110767 · NIGMS · UNIVERSITY OF NEVADA RENO · PI SANDERS, KENTON M · 2014 to 2018
$5.4M
Regulation of Spermatogenesis by X-linked miRNAsR01HD060858 · NICHD · UNIVERSITY OF NEVADA RENO · PI MCCARREY, JOHN R, YAN, WEI · 2010 to 2014
$2.0M
Are sperm-borne small RNAs important?R21HD071736 · NICHD · UNIVERSITY OF NEVADA RENO · PI YAN, WEI · 2012 to 2013
$380k
Regulation of Leydig cell function by small noncoding RNAsR03HD074573 · NICHD · UNIVERSITY OF NEVADA RENO · PI YAN, WEI · 2013 to 2014
$139k
NCRR NIH HHS P20 RR018751NCRR NIH HHS P20-RR18751NICHD NIH HHS HD060858NICHD NIH HHS HD071736NICHD NIH HHS HD074573NICHD NIH HHS R01 HD060858NICHD NIH HHS R03 HD074573NICHD NIH HHS R21 HD071736NIGMS NIH HHS P30 GM110767
6 · The paper itself

Abstract

PIWI-interacting RNAs (piRNAs) are small noncoding RNAs that bind PIWI family proteins exclusively expressed in the germ cells of mammalian gonads. MIWI2-associated piRNAs are essential for silencing transposons during primordial germ cell development, and MIWI-bound piRNAs are required for normal spermatogenesis during adulthood in mice. Although piRNAs have long been regarded as germ cell-specific, increasing lines of evidence suggest that somatic cells also express piRNA-like RNAs (pilRNAs). Here, we report the detection of abundant pilRNAs in somatic cells, which are similar to MIWI-associated piRNAs mainly expressed in pachytene spermatocytes and round spermatids in the testis. Based on small RNA deep sequencing and quantitative PCR analyses, pilRNA expression is dynamic and displays tissue specificity. Although pilRNAs are similar to pachytene piRNAs in both size and genomic origins, they have a distinct ping-pong signature. Furthermore, pilRNA biogenesis appears to utilize a yet to be identified pathway, which is different from all currently known small RNA biogenetic pathways. In addition, pilRNAs appear to preferentially target the 3'-UTRs of mRNAs in a partially complementary manner. Our data suggest that pilRNAs, as an integral component of the small RNA transcriptome in somatic cell lineages, represent a distinct population of small RNAs that may have functions similar to germ cell piRNAs.

Indexed as

3' Untranslated RegionsAnimalsBase SequenceGene Expression RegulationInterstitial Cells of CajalIntestine, SmallMaleMice, Inbred C57BLMice, KnockoutMice, TransgenicPachytene StageReverse Transcriptase Polymerase Chain ReactionRNA, MessengerRNA, Small InterferingSequence Analysis, RNASertoli Cells3' Untranslated RegionsRNA, MessengerRNA, Small InterferingGene RegulationRNARNA Interference (RNAi)Somatic Cell GeneticsTransposable Element (TE)

Identifiers

PMID25320077
PMCPMC4239631
OpenAlexW2109556804

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.