Evidence map›Paper›PMID 25319996›Full record

ArticleGenome research2014

Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis.

Maxim Pimkin, Andrew V Kossenkov, Tejaswini Mishra, Christapher S Morrissey, Weisheng Wu, Cheryl A Keller, Gerd A Blobel, Dongwon Lee, Michael A Beer, Ross C Hardison and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. ETS emerges to heat up adipose.Genes & development · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Transcription Factor TAL1 in Erythropoiesis.Advances in experimental medicine and biology · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Tracing the cis-regulatory changes underlying the endometrial control of placental invasion.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Article
  19. Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Maxim PimkinDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104, USA; Pediatric Residency Program, Department of Pediatrics, Children's Hospital of Pittsburgh of UPMC, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15224, USA;
Andrew V KossenkovCenter for Systems and Computational Biology, The Wistar Institute, Philadelphia 19019, Pennsylvania, USA;
Tejaswini MishraCenter for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA;
Christapher S MorrisseyCenter for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA;
Weisheng WuCenter for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA;
Cheryl A KellerCenter for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA;
Gerd A BlobelDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104, USA; University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania 19104, USA;
Dongwon LeeMcKusick-Nathans Institute of Genetic Medicine and Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Michael A BeerMcKusick-Nathans Institute of Genetic Medicine and Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.
Ross C HardisonCenter for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA;
Mitchell J WeissDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104, USA; weissmi@email.chop.edu rch8@psu.edu.
Pennsylvania State University · USChildren's Hospital of Philadelphia · USJohns Hopkins University · USThe Wistar Institute · US

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
Safety &Efficacy of Intravas. Del. of AAV-F.IX to Skeletal MuscleP01HL064190 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI ARRUDA, VALDER R. · 2000 to 2015
$27.8M
Toward a comprehensive functional annotation of the human genomeU54HG006998 · NHGRI · HUDSON-ALPHA INSTITUTE FOR BIOTECHNOLOGY · PI MYERS, RICHARD M · 2012 to 2016
$17.5M
Transcriptional Networks Controlling Erythroid DifferentiationR01DK054937 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI Gerd A Blobel · 1999 to 2026
$12.8M
Protein CoreP01HL110860 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI RAUOVA, LUBICA · 2012 to 2016
$11.4M
Embryonic Stem Cell-Derived Platelets as Cellular TherapeuticsU01HL099656 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI PONCZ, MORTIMER · 2009 to 2015
$8.6M
Controlling Hematopoietic Lineage Commitment from ESC to PlateletsU01HL099993 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TOROK-STORB, BEVERLY J. · 2009 to 2015
$8.3M
Research BaseP30DK090969 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI CARROLL, MARTIN · 2010 to 2015
$5.7M
Global Predictions and Tests of Erythroid RegulationR01DK065806 · NIDDK · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI BLOBEL, GERD A, CHIAROMONTE, FRANCESCA · 2004 to 2013
$5.3M
Roles of CBP &PCAF During Hematopoietic DifferentiationR01DK058044 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI BLOBEL, GERD A · 2002 to 2023
$4.5M
Epigenetic Control of Hematopoietic Gene ExpressionR37DK058044 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI BLOBEL, GERD A · 2010 to 2019
$3.7M
SVM-based Analysis of the Fine Scale Structure of Regulatory ElementsR01HG007348 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI BEER, MICHAEL A · 2013 to 2017
$2.3M
NHGRI NIH HHS 1R01HG007348-01NHGRI NIH HHS R01 HG007348NHGRI NIH HHS RC2 HG005573NHGRI NIH HHS RC2HG005573NHGRI NIH HHS U54 HG006998NHGRI NIH HHS U54HG006998NHLBI NIH HHS U01 HL099656NHLBI NIH HHS U01HL099656NIDDK NIH HHS P30 DK090969NIDDK NIH HHS P30DK090969NIDDK NIH HHS R01 DK054937NIDDK NIH HHS R01 DK058044NIDDK NIH HHS R01 DK065806NIDDK NIH HHS R01DK065806NIDDK NIH HHS R01DK54937NIDDK NIH HHS R01DK58044NIDDK NIH HHS R37 DK058044NIDDK NIH HHS R37DK058044
6 · The paper itself

Abstract

Combinatorial actions of relatively few transcription factors control hematopoietic differentiation. To investigate this process in erythro-megakaryopoiesis, we correlated the genome-wide chromatin occupancy signatures of four master hematopoietic transcription factors (GATA1, GATA2, TAL1, and FLI1) and three diagnostic histone modification marks with the gene expression changes that occur during development of primary cultured megakaryocytes (MEG) and primary erythroblasts (ERY) from murine fetal liver hematopoietic stem/progenitor cells. We identified a robust, genome-wide mechanism of MEG-specific lineage priming by a previously described stem/progenitor cell-expressed transcription factor heptad (GATA2, LYL1, TAL1, FLI1, ERG, RUNX1, LMO2) binding to MEG-associated cis-regulatory modules (CRMs) in multipotential progenitors. This is followed by genome-wide GATA factor switching that mediates further induction of MEG-specific genes following lineage commitment. Interaction between GATA and ETS factors appears to be a key determinant of these processes. In contrast, ERY-specific lineage priming is biased toward GATA2-independent mechanisms. In addition to its role in MEG lineage priming, GATA2 plays an extensive role in late megakaryopoiesis as a transcriptional repressor at loci defined by a specific DNA signature. Our findings reveal important new insights into how ERY and MEG lineages arise from a common bipotential progenitor via overlapping and divergent functions of shared hematopoietic transcription factors.

Indexed as

Cell DifferentiationCell LineageAnimalsBase SequenceBasic Helix-Loop-Helix ProteinsBinding SitesChromatinCluster AnalysisErythropoiesisGATA1 Transcription FactorGATA2 Transcription FactorGene Expression ProfilingGene SilencingGenome-Wide Association StudyHematopoietic Stem CellsHistonesBasic Helix-Loop-Helix ProteinsChromatinGATA1 Transcription FactorGATA2 Transcription FactorHistonesProto-Oncogene Protein c-fli-1Proto-Oncogene ProteinsProto-Oncogene Proteins c-etsTal1 protein, mouseT-Cell Acute Lymphocytic Leukemia Protein 1Transcription Factors

Identifiers

PMID25319996
PMCPMC4248311
OpenAlexW2120251864

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.