Evidence map›Paper›PMID 25319826›Full record

ArticleGenes & development2014

RBBP6 isoforms regulate the human polyadenylation machinery and modulate expression of mRNAs with AU-rich 3' UTRs.

Dafne Campigli Di Giammartino, Wencheng Li, Koichi Ogami, Jossie J Yashinskie, Mainul Hoque, Bin Tian, James L Manley

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 95 citations in OpenAlex.

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  20. Molecular Insights into mRNA Polyadenylation and Deadenylation.International journal of molecular sciences · 2022
    Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Dafne Campigli Di GiammartinoDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA;
Wencheng LiDepartment of Biochemistry and Molecular Biology, Rutgers New Jersey Medical School, Newark, New Jersey 07103, USA.
Koichi OgamiDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA;
Jossie J YashinskieDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA;
Mainul HoqueDepartment of Biochemistry and Molecular Biology, Rutgers New Jersey Medical School, Newark, New Jersey 07103, USA.
Bin TianDepartment of Biochemistry and Molecular Biology, Rutgers New Jersey Medical School, Newark, New Jersey 07103, USA.
James L ManleyDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA; jlm2@columbia.edu.
Columbia University · USRutgers, The State University of New Jersey · USRutgers New Jersey Medical School

Funding

Regulation of Alternative Cleavage and PolyadenylationR01GM084089 · NIGMS · WISTAR INSTITUTE · PI TIAN, BIN · 2008 to 2023
$6.7M
MRNA SYTHESIS IN ANIMAL CELLS--3END FORMATIONR01GM028983 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MANLEY, JAMES L. · 1985 to 2014
$6.4M
NIGMS NIH HHS GM084089NIGMS NIH HHS NIH GM28983NIGMS NIH HHS R01 GM028983NIGMS NIH HHS R01 GM084089
6 · The paper itself

Abstract

Polyadenylation of mRNA precursors is mediated by a large multisubunit protein complex. Here we show that RBBP6 (retinoblastoma-binding protein 6), identified initially as an Rb- and p53-binding protein, is a component of this complex and functions in 3' processing in vitro and in vivo. RBBP6 associates with other core factors, and this interaction is mediated by an unusual ubiquitin-like domain, DWNN ("domain with no name"), that is required for 3' processing activity. The DWNN is also expressed, via alternative RNA processing, as a small single-domain protein (isoform 3 [iso3]). Importantly, we show that iso3, known to be down-regulated in several cancers, competes with RBBP6 for binding to the core machinery, thereby inhibiting 3' processing. Genome-wide analyses following RBBP6 knockdown revealed decreased transcript levels, especially of mRNAs with AU-rich 3' untranslated regions (UTRs) such as c-Fos and c-Jun, and increased usage of distal poly(A) sites. Our results implicate RBBP6 and iso3 as novel regulators of 3' processing, especially of RNAs with AU-rich 3' UTRs.

Indexed as

Gene Expression Regulation3' Untranslated RegionsCarrier ProteinsCleavage And Polyadenylation Specificity FactorDNA-Binding ProteinsGene Knockdown TechniquesHumansPolyadenylationProtein BindingProtein IsoformsProtein Structure, TertiaryRNA, MessengerUbiquitin-Protein Ligases3' Untranslated RegionsCarrier ProteinsCleavage And Polyadenylation Specificity FactorDNA-Binding ProteinsProtein IsoformsRBBP6 protein, humanRNA, MessengerUbiquitin-Protein Ligasesalternative polyadenylationAU-rich mRNApolyadenylationpre-mRNA 3′ end processing

Identifiers

PMID25319826
PMCPMC4201286
OpenAlexW2149785322

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.