Evidence map›Paper›PMID 25319652›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2015

Cell-internalization SELEX: method for identifying cell-internalizing RNA aptamers for delivering siRNAs to target cells.

William H Thiel, Kristina W Thiel, Katie S Flenker, Tom Bair, Adam J Dupuy, James O McNamara, Francis J Miller, Paloma H Giangrande

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. Review
  2. Review
  3. Therapeutic Applications of Aptamers.International journal of molecular sciences · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. In vitro selection of aptamers and their applications.Nature reviews. Methods primers · 2023
    Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Review
  20. An Anti-BCMA RNA Aptamer for miRNA Intracellular Delivery.Molecular therapy. Nucleic acids · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

William H ThielDepartment of Internal Medicine, University of Iowa, 5202 MERF, 200 Hawkins Drive, Iowa City, IA, 52242, USA.
Kristina W Thiel
Katie S Flenker
Tom Bair
Adam J Dupuy
James O McNamara
Francis J Miller
Paloma H Giangrande

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
The Role of Monocytes in non-Hodgkin LymphomaP50CA097274 · NCI · UNIVERSITY OF IOWA · PI WEINER, GEORGE J. · 2002 to 2021
$45.7M
Aptamer-siRNA Chimeras Targeting HER2-Positive Breast CancersR01CA138503 · NCI · UNIVERSITY OF IOWA · PI GIANGRANDE, PALOMA HOBAN · 2009 to 2013
$1.5M
Novel Chimeric RNA Aptamer Technology to Treat Head and Neck CancerR21DE019953 · NIDCR · UNIVERSITY OF IOWA · PI GIANGRANDE, PALOMA HOBAN, KLINGELHUTZ, ALOYSIUS JOHN · 2009 to 2010
$410k
NCI NIH HHS P30 CA086862NCI NIH HHS P50 CA097274NCI NIH HHS R01 CA138503NIDCR NIH HHS R21 DE019953
6 · The paper itself

Abstract

After a decade of work to address cellular uptake, the principal obstacle to RNAi-based therapeutics, there is now well-deserved, renewed optimism about RNAi-based drugs. Phase I and II studies have shown safe, strong, and durable-gene knockdown (80-90%, lasting for a month after a single injection) and/or clinical benefit in treating several liver pathologies. Although promising, these studies have also highlighted the need for robust delivery techniques to develop RNAi therapeutics for treating other organ systems and diseases. Conjugation of siRNAs to cell-specific, synthetic RNA ligands (aptamers) is being proposed as a viable solution to this problem. While encouraging, the extended use of RNA aptamers as a delivery tool for siRNAs awaits the identification of RNA aptamer sequences capable of targeting and entering the cytoplasm of many different cell types. We describe a cell-based selection process for the rapid identification and characterization of RNA aptamers suited for delivering siRNA drugs into the cytoplasm of target cells. This process, termed "cell-internalization SELEX (Systematic Evolution of Ligands by Exponential Enrichment)," entails the combination of multiple sophisticated technologies, including cell culture-based SELEX procedures, next-generation sequencing (NGS), and novel bioinformatics tools.

Indexed as

Drug CarriersRNA InterferenceSELEX Aptamer TechniqueAptamers, NucleotideBiological TransportCell AdhesionCell LineClinical Trials as TopicComputational BiologyDNA-Directed RNA PolymerasesGene LibraryHigh-Throughput Nucleotide SequencingHumansRNA, Small InterferingViral ProteinsAptamers, Nucleotidebacteriophage T7 RNA polymeraseDNA-Directed RNA PolymerasesDrug CarriersRNA, Small InterferingViral Proteins

Identifiers

PMID25319652
PMCPMC4435695

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.