Evidence map›Paper›PMID 25317566›Full record

ArticleACS chemical biology2015

DFG-out mode of inhibition by an irreversible type-1 inhibitor capable of overcoming gate-keeper mutations in FGF receptors.

Zhifeng Huang, Li Tan, Huiyan Wang, Yang Liu, Steven Blais, Jingjing Deng, Thomas A Neubert, Nathanael S Gray, Xiaokun Li, Moosa Mohammadi

Abstract read
In one paragraph

Article in ACS chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Zhifeng HuangSchool of Pharmacy, Wenzhou Medical University , Wenzhou, Zhejiang 325035, China.
Li Tan
Huiyan Wang
Yang Liu
Steven Blais
Jingjing Deng
Thomas A Neubert
Nathanael S Gray
Xiaokun Li
Moosa Mohammadi

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
MECHANISMS OF FGF RECEPTOR REGULATION AND SIGNALINGR01DE013686 · NIDCR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MOHAMMADI, MOOSA · 2000 to 2020
$12.3M
Protein Mass Spectrometry Core Facility for NeuroscienceP30NS050276 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2005 to 2015
$7.9M
Design of inhibitors of drug-resistance protein kinasesR01CA130876 · NCI · DANA-FARBER CANCER INST · PI GRAY, NATHANAEL SCHIANDER · 2008 to 2012
$2.1M
Training program in Molecular BiophysicsT32GM088118 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI STOKES, DAVID L. · 2010 to 2019
$1.8M
LTQ-Orbitrap Mass Spectrometer.S10RR027990 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2011 to 2011
$600k
NCI NIH HHS CA016087NCI NIH HHS CA130876-05NCI NIH HHS P30 CA016087NCI NIH HHS R01 CA130876NCRR NIH HHS S10 RR027990NCRR NIH HHS S10RR027990NIDCR NIH HHS R01 DE013686NIGMS NIH HHS T32 GM088118NINDS NIH HHS P30 NS050276
6 · The paper itself

Abstract

Drug-resistance acquisition through kinase gate-keeper mutations is a major hurdle in the clinic. Here, we determined the first crystal structures of the human FGFR4 kinase domain (FGFR4K) alone and complexed with ponatinib, a promiscuous type-2 (DFG-out) kinase inhibitor, and an oncogenic FGFR4K harboring the V550L gate-keeper mutation bound to FIIN-2, a new type-1 irreversible inhibitor. Remarkably, like ponatinib, FIIN-2 also binds in the DFG-out mode despite lacking a functional group necessary to occupy the pocket vacated upon the DFG-out flip. Structural analysis reveals that the covalent bond between FIIN-2 and a cysteine, uniquely present in the glycine-rich loop of FGFR kinases, facilitates the DFG-out conformation, which together with the internal flexibility of FIIN-2 enables FIIN-2 to avoid the steric clash with the gate-keeper mutation that causes the ponatinib resistance. The structural data provide a blueprint for the development of next generation anticancer inhibitors through combining the salient inhibitory mechanisms of ponatinib and FIIN-2.

Indexed as

Drug Resistance, NeoplasmMutationAmino Acid MotifsAnimalsCell LineCell SurvivalCrystallography, X-RayHumansMiceModels, MolecularOligopeptidesProtein Kinase InhibitorsReceptor, Fibroblast Growth Factor, Type 4Spectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTandem Mass SpectrometryDFG peptideFGFR4 protein, humanOligopeptidesProtein Kinase InhibitorsReceptor, Fibroblast Growth Factor, Type 4

Identifiers

PMID25317566
PMCPMC4301177

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.