Evidence map›Paper›PMID 25316922›Full record

ArticleApplied physics letters2014

Accurate measurement of force and displacement with optical tweezers using DNA molecules as metrology standards.

Damian delToro, Douglas E Smith

Abstract read
In one paragraph

Article in Applied physics letters, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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  12. Nonequilibrium dynamics and ultraslow relaxation of confined DNA during viral packaging.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Damian delToroDepartment of Physics, University of California , San Diego, Mail Code 0379, 9500 Gilman Drive, La Jolla, California 92093, USA.
Douglas E SmithDepartment of Physics, University of California , San Diego, Mail Code 0379, 9500 Gilman Drive, La Jolla, California 92093, USA.

Funding

Mechanisms of Viral DNA Packaging: Biophysical, Biochemical, & Genetic AnalysisR01GM088186 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CATALANO, CARLOS ENRIQUE, FEISS, MICHAEL · 2011 to 2014
$2.9M
NIGMS NIH HHS R01 GM088186
6 · The paper itself

Abstract

Optical tweezers facilitate measurement of piconewton-level forces and nanometer-level displacements and have broad applications in biophysics and soft matter physics research. We have shown previously that DNA molecules can be used as metrology standards to define such measurements. Force-extension measurements on two DNA molecules of different lengths can be used to determine four necessary measurement parameters. Here, we show that the accuracy of determining these parameters can be improved by more than 7-fold by incorporating measurements of the DNA overstretching transition and using a multi-step data analysis procedure. This method results in very robust and precise fitting of DNA force-extension measurements to the worm-like chain model. We verify the accuracy through independent measurements of DNA stretching, DNA unzipping, and microsphere contact forces.

Identifiers

PMID25316922
PMCPMC4169375

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.